Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M5T36_RS16625 Genome accession   NZ_CP103623
Coordinates   3438753..3439358 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 3985     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3433753..3444358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5T36_RS16605 (M5T36_16605) aes 3433790..3434749 (+) 960 WP_000801832.1 acetyl esterase -
  M5T36_RS16610 (M5T36_16610) hemH 3434746..3435708 (-) 963 WP_001250088.1 ferrochelatase -
  M5T36_RS16615 (M5T36_16615) adk 3435944..3436588 (-) 645 WP_001220233.1 adenylate kinase -
  M5T36_RS16620 (M5T36_16620) htpG 3436769..3438643 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  M5T36_RS16625 (M5T36_16625) recR 3438753..3439358 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  M5T36_RS16630 (M5T36_16630) ybaB 3439358..3439687 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  M5T36_RS16635 (M5T36_16635) dnaX 3439740..3441671 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  M5T36_RS16640 (M5T36_16640) apt 3441800..3442351 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  M5T36_RS16645 (M5T36_16645) ybaN 3442504..3442881 (-) 378 WP_001188905.1 DUF454 family protein -
  M5T36_RS16650 (M5T36_16650) priC 3442951..3443478 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  M5T36_RS16655 (M5T36_16655) rsmS 3443492..3443653 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=623733 M5T36_RS16625 WP_001195025.1 3438753..3439358(-) (recR) [Escherichia coli strain 3985]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=623733 M5T36_RS16625 WP_001195025.1 3438753..3439358(-) (recR) [Escherichia coli strain 3985]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443