Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LJY09_RS22005 Genome accession   NZ_CP086208
Coordinates   4256058..4257785 (-) Length   575 a.a.
NCBI ID   WP_028411588.1    Uniprot ID   A0AAX6BQB3
Organism   Priestia sp. J2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4251058..4262785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY09_RS21985 - 4251411..4251563 (+) 153 WP_013059130.1 YycC family protein -
  LJY09_RS21990 - 4251877..4253208 (+) 1332 WP_098112935.1 peptide MFS transporter -
  LJY09_RS21995 spo0A 4253579..4254367 (-) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  LJY09_RS22000 spoIVB 4254595..4255875 (-) 1281 WP_028411587.1 SpoIVB peptidase -
  LJY09_RS22005 recN 4256058..4257785 (-) 1728 WP_028411588.1 DNA repair protein RecN Machinery gene
  LJY09_RS22010 ahrC 4257802..4258251 (-) 450 WP_013059136.1 transcriptional regulator AhrC/ArgR -
  LJY09_RS22015 - 4258413..4259240 (-) 828 WP_028411589.1 TlyA family RNA methyltransferase -
  LJY09_RS22020 dxs 4259237..4261138 (-) 1902 WP_028411590.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LJY09_RS22025 - 4261459..4262355 (-) 897 WP_028411591.1 polyprenyl synthetase family protein -
  LJY09_RS22030 - 4262355..4262588 (-) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64683.23 Da        Isoelectric Point: 4.7963

>NTDB_id=623728 LJY09_RS22005 WP_028411588.1 4256058..4257785(-) (recN) [Priestia sp. J2]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDNVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKQTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=623728 LJY09_RS22005 WP_028411588.1 4256058..4257785(-) (recN) [Priestia sp. J2]
TTGTTAGCTGAATTATCCATTAAAAACTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGAAAGTCGATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCGGAGT
TTGTCCGCCATGGAACAGACAGAGCCGAAATTGAAGGGCTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCCAAACAAGTCGGTTTGGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGATATCACTACAAATGGGAAAAGTATTTG
CCGTATCAATGGGAAGCTCGTCACGTTAGCTATCCTACGTGAAGTCGGACAGACGTTAATTGATATACATGGACAGCACG
AGCACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGAGAGGTATTTTCGAGGTATACGTCGCTAAAAAAGCAGTTGGATCAATTAACTGAAAATGAGCAGCAGAT
GGCACATCGCCTCGATCTTATTCAATTTCAATTAGATGAAATCAAAGCCGCAAATTTGCAGCTCAATGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCCAACTTTGAAAAGATCTATACGTCGCTAAACGATGCGTACAATGCGCTGCACGGT
GAACATCAAGGTCTGGATTGGGTAGGCGTAGCAATGAATCATACGGAGGATATTTCGTCACTGGAAAAAAACTATGCCGA
AATTTCGGAGATTATTTCATCGAGCTTCTATCAGTTAGAAGACGCATCTTATAAAATTCGTCAGCAGCTGGATTTATTAG
AATTTGATCCGAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCACTTAAAGCGTAAATACGGTCAAAGT
GTAGATGAAATTCTAGAATATGCAGCACAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCACGTGAGCAA
GATCAAAGAACAGTTAAACAGCGTAGCACAGGATTTATTAGTAGAAGCTAACAACGTTTCAGCTATTCGAAAAAAACTTG
CTCAGGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTCTATATGGCTAAAACCGTATTTCAAATTAAATTCTCT
GTCGTAAATGCAGGTAAAAATGACGTTGAAGTAAATGGCGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGA
GTTTTATATTTCTACCAACCCTGGTGAACCGTTAAAGCCTCTTGCGAAAGTAGCATCAGGCGGAGAACTGTCAAGGATCA
TGCTGGCGTTAAAGAGCATCTTCTCTAAGCATCAAGGCGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCCATTTCCGTTGATTCGCAGGTTCTTTGCATATCTCATTTGCC
GCAGGTAGCAGCTATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACATCTGTTCTTC
CATTAACTCTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAGCAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCAGACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.931

100

0.65