Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LJY09_RS19100 Genome accession   NZ_CP086208
Coordinates   3677184..3677624 (+) Length   146 a.a.
NCBI ID   WP_028414988.1    Uniprot ID   A0AAX6BNS1
Organism   Priestia sp. J2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3672184..3682624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY09_RS19080 - 3672588..3673259 (-) 672 WP_028414985.1 response regulator transcription factor -
  LJY09_RS19085 - 3673585..3674403 (+) 819 WP_028414986.1 squalene/phytoene synthase family protein -
  LJY09_RS19090 - 3674439..3676388 (-) 1950 WP_155010492.1 FUSC family protein -
  LJY09_RS19095 - 3676545..3676805 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  LJY09_RS19100 nucA/comI 3677184..3677624 (+) 441 WP_028414988.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LJY09_RS19105 comJ 3677660..3678067 (+) 408 WP_098113593.1 competence protein ComJ -
  LJY09_RS19110 - 3678169..3678759 (-) 591 WP_028414990.1 CPBP family intramembrane glutamic endopeptidase -
  LJY09_RS19115 helD 3679144..3681462 (-) 2319 WP_228307391.1 RNA polymerase recycling motor HelD -
  LJY09_RS27735 - 3681706..3681831 (-) 126 WP_014458690.1 hypothetical protein -
  LJY09_RS19120 - 3681972..3682487 (-) 516 WP_108674280.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16034.86 Da        Isoelectric Point: 4.4411

>NTDB_id=623723 LJY09_RS19100 WP_028414988.1 3677184..3677624(+) (nucA/comI) [Priestia sp. J2]
MSTYGKKLMASLFIIIACVLGFIGHAAFLAPEKTEAEANYDATLYFPLDRYPETGDHIRDAITAGHSSVCTIDRDGAEAN
REESLKGYPTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 441 bp        

>NTDB_id=623723 LJY09_RS19100 WP_028414988.1 3677184..3677624(+) (nucA/comI) [Priestia sp. J2]
ATGAGTACATACGGGAAAAAATTAATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCGGC
GTTTTTAGCTCCTGAAAAAACGGAAGCCGAAGCAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAA
CCGGCGATCATATTCGCGACGCAATTACTGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGATGGTGCTGAAGCAAAC
CGAGAAGAATCGCTGAAAGGATACCCAACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGG
CGGAGCAGGAGCTGATATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAAC
AGTACCCAGATGGTACGCGCGTACAATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

86.301

0.562