Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LJY09_RS16405 Genome accession   NZ_CP086208
Coordinates   3210378..3210800 (+) Length   140 a.a.
NCBI ID   WP_098112357.1    Uniprot ID   -
Organism   Priestia sp. J2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3205378..3215800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY09_RS16380 - 3205574..3206395 (+) 822 WP_098112354.1 sensor histidine kinase -
  LJY09_RS16385 - 3206396..3207037 (+) 642 WP_033580507.1 response regulator -
  LJY09_RS16390 - 3207215..3208207 (+) 993 WP_228307328.1 glycerophosphodiester phosphodiesterase family protein -
  LJY09_RS16395 - 3208364..3209743 (+) 1380 WP_228307329.1 PepSY-associated TM helix domain-containing protein -
  LJY09_RS16400 - 3209773..3210237 (+) 465 WP_228307330.1 FixH family protein -
  LJY09_RS16405 nucA/comI 3210378..3210800 (+) 423 WP_098112357.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LJY09_RS16410 - 3210955..3211308 (+) 354 WP_223272376.1 DUF1516 family protein -
  LJY09_RS16415 - 3211349..3211942 (-) 594 WP_228307331.1 hypothetical protein -
  LJY09_RS16420 - 3212095..3212751 (-) 657 WP_028414499.1 TetR/AcrR family transcriptional regulator -
  LJY09_RS16425 - 3212774..3214051 (-) 1278 WP_099000380.1 glycosyltransferase -
  LJY09_RS16430 - 3214384..3214869 (-) 486 WP_108674790.1 hypothetical protein -
  LJY09_RS16435 fsa 3214948..3215616 (-) 669 WP_099000382.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15329.17 Da        Isoelectric Point: 4.4990

>NTDB_id=623718 LJY09_RS16405 WP_098112357.1 3210378..3210800(+) (nucA/comI) [Priestia sp. J2]
MKKIVSGILILVIAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=623718 LJY09_RS16405 WP_098112357.1 3210378..3210800(+) (nucA/comI) [Priestia sp. J2]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTAATAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTCATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTGCTGAAGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCACATCAAGTAGATGAGTTTCCAGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507