Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LJX92_RS22960 Genome accession   NZ_CP086206
Coordinates   5169828..5171195 (-) Length   455 a.a.
NCBI ID   WP_005791613.1    Uniprot ID   A0A7S7S4R6
Organism   Pseudomonas sp. HN8-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5164828..5176195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJX92_RS22940 (LJX92_22970) yjiA 5165714..5166673 (-) 960 WP_228308998.1 GTPase -
  LJX92_RS22945 (LJX92_22975) - 5166863..5167060 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  LJX92_RS22950 (LJX92_22980) - 5167076..5169142 (-) 2067 WP_005791609.1 carbon starvation CstA family protein -
  LJX92_RS22955 (LJX92_22985) - 5169316..5169684 (+) 369 WP_216092128.1 PilZ domain-containing protein -
  LJX92_RS22960 (LJX92_22990) radA 5169828..5171195 (-) 1368 WP_005791613.1 DNA repair protein RadA Machinery gene
  LJX92_RS22965 (LJX92_22995) - 5171231..5171770 (-) 540 WP_005791615.1 ankyrin repeat domain-containing protein -
  LJX92_RS22970 (LJX92_23000) katB 5171828..5173369 (-) 1542 WP_032879397.1 catalase KatB -
  LJX92_RS22975 (LJX92_23005) mscL 5173657..5174076 (+) 420 WP_005791618.1 large-conductance mechanosensitive channel protein MscL -
  LJX92_RS22980 (LJX92_23010) - 5174117..5174893 (-) 777 WP_032879395.1 ferredoxin--NADP reductase -
  LJX92_RS22985 (LJX92_23015) - 5175352..5176062 (+) 711 WP_032879393.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48763.28 Da        Isoelectric Point: 6.8987

>NTDB_id=623681 LJX92_RS22960 WP_005791613.1 5169828..5171195(-) (radA) [Pseudomonas sp. HN8-3]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPAGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=623681 LJX92_RS22960 WP_005791613.1 5169828..5171195(-) (radA) [Pseudomonas sp. HN8-3]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAATG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAAAGCGGTGGTGCCGCAGCCCCTACCGGCCGCGCCGGCTGGACCG
GGCAACAGGCACAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACCGCGTCCGGCGAACTG
GACCGCGTACTTGGCGGTGGCCTGGTCGATGGTTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGCAAGTCGACCAT
CCTCTTGCAAACCCTGTGCAGCATCGCCAGCCGTATGCCGGCGCTGTACGTCACCGGTGAAGAATCCCAACAGCAAGTGG
CCATGCGCGCCCGCCGTTTGGGCCTGCCCCAGGACCAGCTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGGATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCGCC
GGGCGGCGTGTCCCAGGTGCGCGAAAGTGCGGCGCTGTTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGTTGGAGCACATGGTGGATACCGTGCTGTATTTCGAA
GGTGAGTCCGATGGCCGCCTGCGTTTGCTGCGGGCGGTAAAAAACCGCTTTGGCGCCGTGAACGAGTTGGGTGTGTTCGC
CATGACTGACCGTGGGCTGAAAGAAGTCTCCAACCCCTCGGCGATTTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCGACGTGGGAGGGTACCCGGCCCATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCGCGGCGGGTCACGCTTGGCCTGGACCAGAACCGTCTGGCGATGTTGCTGGCGGTATTGCACCGTCACGGCGGCAT
TCCGACCCATGACCAGGATGTTTTCCTTAACGTAGTGGGCGGCGTCAAGGTGCTGGAGACCGCCTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCGCTGCCTCATGATCTGCTGGTGTTTGGTGAGGTCGGCCTGTCGGGC
GAAGTCCGCCCGGTGCCCAGTGGGCAGGAGCGGTTGAAGGAGGCGGCCAAGCATGGGTTCAAGCGGGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCGGCAGGTTTGCAGGTGATTGGGGTGACGCGCCTGGAGCAGGCGTTGGATGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7S4R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47