Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LL005_RS07415 Genome accession   NZ_CP086201
Coordinates   1607958..1608584 (+) Length   208 a.a.
NCBI ID   WP_048962070.1    Uniprot ID   A0AAU9BLQ2
Organism   Enterobacter roggenkampii strain F1057     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602958..1613584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL005_RS07395 (LL005_07410) - 1603357..1605117 (-) 1761 WP_139963289.1 Lon protease family protein -
  LL005_RS07400 (LL005_07415) matP 1605304..1605756 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  LL005_RS07405 (LL005_07420) ompA 1605821..1606876 (-) 1056 WP_023292865.1 porin OmpA -
  LL005_RS07410 (LL005_07425) sulA 1607231..1607740 (-) 510 WP_032637628.1 SOS-induced cell division inhibitor SulA -
  LL005_RS07415 (LL005_07430) sxy/tfoX 1607958..1608584 (+) 627 WP_048962070.1 TfoX/Sxy family DNA transformation protein Regulator
  LL005_RS07420 (LL005_07435) yccS 1608541..1610703 (-) 2163 WP_233396456.1 YccS family putative transporter -
  LL005_RS07425 (LL005_07440) - 1610723..1611169 (-) 447 WP_008499924.1 YccF domain-containing protein -
  LL005_RS07430 (LL005_07445) helD 1611293..1613347 (+) 2055 WP_233396457.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23901.49 Da        Isoelectric Point: 9.6030

>NTDB_id=623633 LL005_RS07415 WP_048962070.1 1607958..1608584(+) (sxy/tfoX) [Enterobacter roggenkampii strain F1057]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLYEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=623633 LL005_RS07415 WP_048962070.1 1607958..1608584(+) (sxy/tfoX) [Enterobacter roggenkampii strain F1057]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCAGTGGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TACTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
ATGAAGCTGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCGCTCCCGGCAGGTAT
CCGCCGGGAACTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567