Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M5S83_RS06990 Genome accession   NZ_CP103609
Coordinates   1436149..1436754 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 4314     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1431149..1441754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5S83_RS06960 (M5S83_06960) rsmS 1431854..1432015 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  M5S83_RS06965 (M5S83_06965) priC 1432029..1432556 (-) 528 WP_001402074.1 primosomal replication protein N'' -
  M5S83_RS06970 (M5S83_06970) ybaN 1432626..1433003 (+) 378 WP_001188905.1 DUF454 family protein -
  M5S83_RS06975 (M5S83_06975) apt 1433156..1433707 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  M5S83_RS06980 (M5S83_06980) dnaX 1433836..1435767 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  M5S83_RS06985 (M5S83_06985) ybaB 1435820..1436149 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  M5S83_RS06990 (M5S83_06990) recR 1436149..1436754 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  M5S83_RS06995 (M5S83_06995) htpG 1436864..1438738 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  M5S83_RS07000 (M5S83_07000) adk 1438919..1439563 (+) 645 WP_001220233.1 adenylate kinase -
  M5S83_RS07005 (M5S83_07005) hemH 1439799..1440761 (+) 963 WP_001250088.1 ferrochelatase -
  M5S83_RS07010 (M5S83_07010) aes 1440758..1441717 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=623628 M5S83_RS06990 WP_001195025.1 1436149..1436754(+) (recR) [Escherichia coli strain 4314]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=623628 M5S83_RS06990 WP_001195025.1 1436149..1436754(+) (recR) [Escherichia coli strain 4314]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443