Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LLC55_RS08060 Genome accession   NZ_CP086200
Coordinates   1686190..1687581 (-) Length   463 a.a.
NCBI ID   WP_011258418.1    Uniprot ID   A0A854CLX6
Organism   Xanthomonas oryzae pv. oryzae strain GXO2006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1683990..1688767 1686190..1687581 within 0


Gene organization within MGE regions


Location: 1683990..1688767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLC55_RS08050 (LLC55_08050) - 1683990..1685030 (-) 1041 Protein_1537 IS3 family transposase -
  LLC55_RS08055 (LLC55_08055) - 1685160..1685809 (+) 650 Protein_1538 IS701-like element ISXo15 family transposase -
  LLC55_RS08060 (LLC55_08060) radA 1686190..1687581 (-) 1392 WP_011258418.1 DNA repair protein RadA Machinery gene
  LLC55_RS08065 (LLC55_08065) - 1687666..1688707 (-) 1042 Protein_1540 IS3 family transposase -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 48847.13 Da        Isoelectric Point: 7.3924

>NTDB_id=623624 LLC55_RS08060 WP_011258418.1 1686190..1687581(-) (radA) [Xanthomonas oryzae pv. oryzae strain GXO2006]
MAKAKTAYVCGECGAEYTKWQGQCTECGVWNTLSEIVLESATPGGKASPATSRRIGWAGKAEAPKITALKDVQQSEQARV
STGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALASMASTLPVLYVTGEESLAQVAGRAVRLDLPLDGLNALSET
GIEHILQHASVARPRLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMV
DAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTQQPGSCVMVTREGTRPLMVEVQAL
VDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAF
GEVGLSGEIRPVPNGEDRLKEAATHGFKRAIVPRANAPKTTSIKGMEIIAVERLRQALEVAAD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=623624 LLC55_RS08060 WP_011258418.1 1686190..1687581(-) (radA) [Xanthomonas oryzae pv. oryzae strain GXO2006]
ATGGCGAAGGCGAAGACGGCCTACGTGTGCGGGGAGTGCGGTGCCGAGTACACAAAGTGGCAGGGGCAGTGCACCGAGTG
CGGTGTCTGGAACACGCTGAGCGAAATTGTGCTCGAAAGCGCAACGCCGGGCGGCAAGGCCTCGCCTGCGACCTCGCGGC
GTATCGGTTGGGCCGGCAAGGCCGAGGCGCCCAAGATCACTGCGCTCAAGGACGTGCAGCAGTCCGAGCAGGCGCGCGTG
TCCACCGGCATCGGCGAGTTCGACCGGGTGTTGGGCGGCGGGTTGGTCGAGGGGGCGGTGGTGCTGATCGGCGGCGACCC
GGGCATCGGCAAATCGACGCTGCTGCTGCAGGCGCTGGCGAGCATGGCCTCTACGTTGCCGGTGTTGTACGTCACCGGCG
AAGAATCGCTGGCCCAGGTAGCAGGGCGCGCGGTGCGCCTGGATCTGCCGCTGGACGGCCTGAACGCCCTGTCCGAAACC
GGTATCGAACACATCCTGCAGCACGCCAGCGTGGCGCGGCCGAGGCTGATCGTGGCCGATTCGGTGCAGACCTTGTGGAC
CGAATCGCTTACCGCAGCGCCAGGCTCGGTGAGCCAGGTGCGCGAGAGCGCAGCGCGGCTGGTGCGCTACGCCAAGGAAA
CCGGCACCGCCGTGTTTCTGGTCGGCCATGTGACCAAGGAAGGCGGTATCGCCGGGCCACGCGTGCTTGAGCACATGGTC
GATGCGGTGCTGTATTTCGAAGGCGAAAGTGGCAGCCGATTCCGCCTGTTGCGCGCGTTCAAGAACCGCTTCGGTGCGGT
CAACGAGCTAGGCGTCTTCGCGATGGGCGAGAAGGGCCTCAAGGAAGTCTCCAACCCATCGGCAATCTTCCTGTCCGGTG
GCAGCACTCAGCAACCGGGCAGTTGCGTGATGGTCACCCGCGAAGGCACCCGCCCCCTGATGGTGGAGGTGCAGGCCTTG
GTGGATGCCTCGCCGTTGTCCAATCCGCGCCGCGTTGCGGTGGGGCTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGT
CCTGCACCGCCATGGCGGCATCGTGGTCGGCGATCAGGACGTGTTCGTCAATGTGGTGGGTGGCATCCGCGTGCAGGAAA
CGGCGGCCGATCTGCCCGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGACCGGCCGTTGGCCGAAAAGACCATCGCGTTC
GGCGAAGTGGGACTGTCCGGCGAAATCCGCCCGGTGCCCAACGGCGAGGACCGCCTGAAGGAAGCGGCGACGCATGGCTT
CAAGCGCGCCATTGTGCCCCGCGCCAATGCGCCCAAGACGACCAGCATCAAGGGAATGGAAATTATCGCAGTGGAGCGCT
TGAGACAGGCGCTGGAGGTGGCGGCAGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(90-228)

Subunit ChlI of Mg-chelatase (ChlI)

(352-436)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854CLX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.38

100

0.484
  radA Streptococcus mitis NCTC 12261

42.484

99.136

0.421
  radA Streptococcus pneumoniae Rx1

42.484

99.136

0.421
  radA Streptococcus pneumoniae D39

42.484

99.136

0.421
  radA Streptococcus pneumoniae R6

42.484

99.136

0.421
  radA Streptococcus pneumoniae TIGR4

42.484

99.136

0.421
  radA Streptococcus mitis SK321

42.266

99.136

0.419