Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M5S79_RS16470 Genome accession   NZ_CP103570
Coordinates   3416017..3416622 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 3045     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3411017..3421622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5S79_RS16450 (M5S79_16450) aes 3411054..3412013 (+) 960 WP_000801813.1 acetyl esterase -
  M5S79_RS16455 (M5S79_16455) hemH 3412010..3412972 (-) 963 WP_001250103.1 ferrochelatase -
  M5S79_RS16460 (M5S79_16460) adk 3413208..3413852 (-) 645 WP_001220233.1 adenylate kinase -
  M5S79_RS16465 (M5S79_16465) htpG 3414033..3415907 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  M5S79_RS16470 (M5S79_16470) recR 3416017..3416622 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  M5S79_RS16475 (M5S79_16475) ybaB 3416622..3416951 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  M5S79_RS16480 (M5S79_16480) dnaX 3417004..3418935 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  M5S79_RS16485 (M5S79_16485) apt 3419064..3419615 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  M5S79_RS16490 (M5S79_16490) ybaN 3419768..3420145 (-) 378 WP_001188905.1 DUF454 family protein -
  M5S79_RS16495 (M5S79_16495) priC 3420215..3420742 (+) 528 WP_046464149.1 primosomal replication protein N'' -
  M5S79_RS16500 (M5S79_16500) rsmS 3420756..3420917 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=623317 M5S79_RS16470 WP_001195025.1 3416017..3416622(-) (recR) [Escherichia coli strain 3045]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=623317 M5S79_RS16470 WP_001195025.1 3416017..3416622(-) (recR) [Escherichia coli strain 3045]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443