Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   LL142_RS06685 Genome accession   NZ_CP086168
Coordinates   1305161..1305676 (-) Length   171 a.a.
NCBI ID   WP_002893981.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CMP10190     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1300161..1310676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL142_RS06670 (LL142_06670) - 1300274..1302001 (-) 1728 WP_199381573.1 flagellin A -
  LL142_RS06675 (LL142_06675) - 1302084..1303910 (-) 1827 WP_002893985.1 motility associated factor glycosyltransferase family protein -
  LL142_RS06680 (LL142_06680) - 1303920..1305161 (-) 1242 WP_002893983.1 DUF2920 family protein -
  LL142_RS06685 (LL142_06685) ctsG 1305161..1305676 (-) 516 WP_002893981.1 type II secretion system protein Machinery gene
  LL142_RS06690 (LL142_06690) tsaD 1305677..1306684 (-) 1008 WP_002867317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  LL142_RS06695 (LL142_06695) - 1306681..1308075 (-) 1395 WP_025998017.1 M99 family carboxypeptidase catalytic domain-containing protein -
  LL142_RS06700 (LL142_06700) dxr 1308077..1309147 (-) 1071 WP_002873627.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  LL142_RS06705 (LL142_06705) cdsA 1309144..1309869 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  LL142_RS06710 (LL142_06710) - 1309878..1310216 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18664.49 Da        Isoelectric Point: 6.4683

>NTDB_id=623192 LL142_RS06685 WP_002893981.1 1305161..1305676(-) (ctsG) [Campylobacter jejuni strain CMP10190]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNIKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=623192 LL142_RS06685 WP_002893981.1 1305161..1305676(-) (ctsG) [Campylobacter jejuni strain CMP10190]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACATTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAACAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942