Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   LL142_RS03240 Genome accession   NZ_CP086168
Coordinates   628338..628775 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain CMP10190     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 623338..633775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL142_RS03220 (LL142_03220) kdpD 623826..625757 (+) 1932 WP_002856839.1 sensor histidine kinase -
  LL142_RS03225 (LL142_03225) uvrB 625752..627725 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  LL142_RS03230 (LL142_03230) - 627879..628109 (+) 231 WP_002852327.1 hypothetical protein -
  LL142_RS03235 (LL142_03235) - 628099..628341 (+) 243 WP_002854947.1 hypothetical protein -
  LL142_RS03240 (LL142_03240) Cj0683 628338..628775 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LL142_RS03245 (LL142_03245) priA 628757..630610 (+) 1854 WP_002856756.1 primosomal protein N' -
  LL142_RS03250 (LL142_03250) cipA 630620..632012 (-) 1393 Protein_630 DUF2972 domain-containing protein -
  LL142_RS03255 (LL142_03255) ispG 632158..633231 (+) 1074 WP_052804457.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=623183 LL142_RS03240 WP_002852324.1 628338..628775(+) (Cj0683) [Campylobacter jejuni strain CMP10190]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=623183 LL142_RS03240 WP_002852324.1 628338..628775(+) (Cj0683) [Campylobacter jejuni strain CMP10190]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1