Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   LL139_RS06465 Genome accession   NZ_CP086166
Coordinates   1273578..1274546 (+) Length   322 a.a.
NCBI ID   WP_013463586.1    Uniprot ID   -
Organism   Campylobacter jejuni strain OBT12377     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1268578..1279546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL139_RS06440 (LL139_06440) cdsA 1269485..1270210 (-) 726 WP_010790659.1 phosphatidate cytidylyltransferase -
  LL139_RS06445 (LL139_06445) - 1270219..1270557 (-) 339 WP_002852397.1 hypothetical protein -
  LL139_RS06450 (LL139_06450) - 1270559..1271866 (-) 1308 WP_010790660.1 NFACT RNA binding domain-containing protein -
  LL139_RS06455 (LL139_06455) mobA 1271928..1272503 (+) 576 WP_002853737.1 molybdenum cofactor guanylyltransferase -
  LL139_RS06460 (LL139_06460) pldA 1272500..1273489 (+) 990 WP_013463585.1 phospholipase A -
  LL139_RS06465 (LL139_06465) ceuB 1273578..1274546 (+) 969 WP_013463586.1 ABC transporter permease Machinery gene
  LL139_RS06470 (LL139_06470) ceuC 1274539..1275477 (+) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  LL139_RS06475 (LL139_06475) ceuD 1275474..1276229 (+) 756 WP_002853463.1 ABC transporter ATP-binding protein -
  LL139_RS06480 (LL139_06480) ceuB 1276242..1277231 (+) 990 WP_002853650.1 enterochelin ABC transporter substrate-binding protein CeuB -
  LL139_RS06485 (LL139_06485) - 1277386..1277607 (+) 222 WP_002853781.1 hypothetical protein -
  LL139_RS06490 (LL139_06490) - 1277608..1277889 (+) 282 WP_002853938.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LL139_RS06500 (LL139_06500) - 1278250..1278804 (-) 555 WP_002854110.1 membrane protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35471.37 Da        Isoelectric Point: 9.6678

>NTDB_id=623140 LL139_RS06465 WP_013463586.1 1273578..1274546(+) (ceuB) [Campylobacter jejuni strain OBT12377]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAVIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDITLNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=623140 LL139_RS06465 WP_013463586.1 1273578..1274546(+) (ceuB) [Campylobacter jejuni strain OBT12377]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAATTAGAAATCATAACGCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATTATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGTATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTTACTCAAGCTGTCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGCGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTATATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAACTTTAAATCTTGGAATTTCTTATAATGGCATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains


Predicted by InterproScan.

(15-317)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988