Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   LL137_RS07105 Genome accession   NZ_CP086164
Coordinates   1406977..1407288 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain OBT12390     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1401977..1412288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL137_RS07085 (LL137_07085) ctsE 1402846..1404405 (-) 1560 WP_013463615.1 GspE/PulE family protein Machinery gene
  LL137_RS07090 (LL137_07090) ctsX 1404395..1404982 (-) 588 WP_002851370.1 membrane protein Machinery gene
  LL137_RS07095 (LL137_07095) ctsP 1404986..1405594 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  LL137_RS07100 (LL137_07100) ctsD 1405587..1406999 (-) 1413 WP_180819945.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  LL137_RS07105 (LL137_07105) ctsR 1406977..1407288 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  LL137_RS07110 (LL137_07110) nifJ 1407312..1410872 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  LL137_RS07115 (LL137_07115) - 1410965..1411608 (-) 644 Protein_1384 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=623094 LL137_RS07105 WP_002855438.1 1406977..1407288(-) (ctsR) [Campylobacter jejuni strain OBT12390]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=623094 LL137_RS07105 WP_002855438.1 1406977..1407288(-) (ctsR) [Campylobacter jejuni strain OBT12390]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1