Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   LL135_RS07310 Genome accession   NZ_CP086162
Coordinates   1435736..1436914 (-) Length   392 a.a.
NCBI ID   WP_002855409.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SHI3134     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1430736..1441914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL135_RS07280 (LL135_07280) - 1431278..1431619 (+) 342 WP_002784057.1 hypothetical protein -
  LL135_RS07285 (LL135_07285) flgM 1431682..1431879 (+) 198 WP_002855362.1 flagellar biosynthesis anti-sigma factor FlgM -
  LL135_RS07290 (LL135_07290) - 1431922..1432356 (+) 435 WP_002779263.1 flagellar protein FlgN -
  LL135_RS07295 (LL135_07295) flgK 1432366..1434192 (+) 1827 WP_002855300.1 flagellar hook-associated protein FlgK -
  LL135_RS07300 (LL135_07300) - 1434209..1434971 (+) 763 Protein_1420 TIGR02757 family protein -
  LL135_RS07305 (LL135_07305) - 1434975..1435739 (+) 765 WP_002855301.1 TSUP family transporter -
  LL135_RS07310 (LL135_07310) ctsF 1435736..1436914 (-) 1179 WP_002855409.1 type II secretion system F family protein Machinery gene
  LL135_RS07315 (LL135_07315) ctsE 1436911..1438470 (-) 1560 WP_013463615.1 GspE/PulE family protein Machinery gene
  LL135_RS07320 (LL135_07320) ctsX 1438460..1439047 (-) 588 WP_002851370.1 membrane protein Machinery gene
  LL135_RS07325 (LL135_07325) ctsP 1439051..1439659 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  LL135_RS07330 (LL135_07330) ctsD 1439652..1441064 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  LL135_RS07335 (LL135_07335) ctsR 1441042..1441353 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45692.29 Da        Isoelectric Point: 9.0972

>NTDB_id=623035 LL135_RS07310 WP_002855409.1 1435736..1436914(-) (ctsF) [Campylobacter jejuni strain SHI3134]
MKFYEVEFLKNNQNYTKTIKAENLNTAQARALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=623035 LL135_RS07310 WP_002855409.1 1435736..1436914(-) (ctsF) [Campylobacter jejuni strain SHI3134]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAGAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAGAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGTGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGTGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCGGGGGTCAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.49

100

0.995