Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   LL135_RS05770 Genome accession   NZ_CP086162
Coordinates   1122520..1123470 (+) Length   316 a.a.
NCBI ID   WP_002853794.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SHI3134     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1117520..1128470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL135_RS05745 (LL135_05745) neuB 1118019..1119059 (+) 1041 WP_002852665.1 N-acetylneuraminate synthase -
  LL135_RS05750 (LL135_05750) neuC 1119056..1120174 (+) 1119 WP_002852786.1 UDP-N-acetylglucosamine 2-epimerase -
  LL135_RS05755 (LL135_05755) - 1120171..1120836 (+) 666 WP_180819930.1 cytidylyltransferase domain-containing protein -
  LL135_RS05760 (LL135_05760) - 1120824..1121657 (+) 834 WP_002854028.1 CatB-related O-acetyltransferase -
  LL135_RS05765 (LL135_05765) - 1121649..1122461 (-) 813 WP_002854116.1 glycosyltransferase family 2 protein -
  LL135_RS05770 (LL135_05770) waaF 1122520..1123470 (+) 951 WP_002853794.1 glycosyltransferase family 9 protein Regulator
  LL135_RS05775 (LL135_05775) - 1123456..1124219 (-) 764 Protein_1120 glycosyltransferase family 25 protein -
  LL135_RS05780 (LL135_05780) gmhA 1124219..1124779 (-) 561 WP_002787744.1 D-sedoheptulose 7-phosphate isomerase -
  LL135_RS05785 (LL135_05785) rfaE1 1124776..1126161 (-) 1386 WP_002853608.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  LL135_RS05790 (LL135_05790) rfaD 1126154..1127107 (-) 954 WP_002853798.1 ADP-glyceromanno-heptose 6-epimerase -
  LL135_RS05795 (LL135_05795) gmhB 1127108..1127668 (-) 561 WP_002853963.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  LL135_RS05800 (LL135_05800) - 1127750..1128052 (+) 303 WP_002852762.1 c-type cytochrome -
  LL135_RS05805 (LL135_05805) ccoS 1128075..1128281 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36225.73 Da        Isoelectric Point: 10.2421

>NTDB_id=623027 LL135_RS05770 WP_002853794.1 1122520..1123470(+) (waaF) [Campylobacter jejuni strain SHI3134]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=623027 LL135_RS05770 WP_002853794.1 1122520..1123470(+) (waaF) [Campylobacter jejuni strain SHI3134]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.61

99.051

0.927