Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   LL135_RS03515 Genome accession   NZ_CP086162
Coordinates   669044..669481 (+) Length   145 a.a.
NCBI ID   WP_227898253.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SHI3134     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 664044..674481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL135_RS03490 (LL135_03490) - 664534..665679 (+) 1146 WP_002854960.1 histidine kinase -
  LL135_RS03495 (LL135_03495) - 665630..666079 (+) 450 WP_227889155.1 DUF4118 domain-containing protein -
  LL135_RS03500 (LL135_03500) uvrB 666458..668431 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  LL135_RS03505 (LL135_03505) - 668585..668815 (+) 231 WP_002852327.1 hypothetical protein -
  LL135_RS03510 (LL135_03510) - 668805..669047 (+) 243 WP_002854947.1 hypothetical protein -
  LL135_RS03515 (LL135_03515) Cj0683 669044..669481 (+) 438 WP_227898253.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LL135_RS03520 (LL135_03520) priA 669463..671316 (+) 1854 WP_021137800.1 primosomal protein N' -
  LL135_RS03525 (LL135_03525) cipA 671326..672723 (-) 1398 Protein_686 DUF2972 domain-containing protein -
  LL135_RS03530 (LL135_03530) ispG 672869..673942 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16689.66 Da        Isoelectric Point: 8.1032

>NTDB_id=623022 LL135_RS03515 WP_227898253.1 669044..669481(+) (Cj0683) [Campylobacter jejuni strain SHI3134]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPISSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=623022 LL135_RS03515 WP_227898253.1 669044..669481(+) (Cj0683) [Campylobacter jejuni strain SHI3134]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGTTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTCTTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993