Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   LL148_RS07320 Genome accession   NZ_CP086161
Coordinates   1438449..1439036 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain SHI4648     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433449..1444036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL148_RS07300 (LL148_07300) - 1434198..1434960 (+) 763 Protein_1420 TIGR02757 family protein -
  LL148_RS07305 (LL148_07305) - 1434964..1435728 (+) 765 WP_002855301.1 TSUP family transporter -
  LL148_RS07310 (LL148_07310) ctsF 1435725..1436903 (-) 1179 WP_002855409.1 type II secretion system F family protein Machinery gene
  LL148_RS07315 (LL148_07315) ctsE 1436900..1438459 (-) 1560 WP_013463615.1 GspE/PulE family protein Machinery gene
  LL148_RS07320 (LL148_07320) ctsX 1438449..1439036 (-) 588 WP_002851370.1 membrane protein Machinery gene
  LL148_RS07325 (LL148_07325) ctsP 1439040..1439648 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  LL148_RS07330 (LL148_07330) ctsD 1439641..1441053 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  LL148_RS07335 (LL148_07335) ctsR 1441031..1441342 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=623009 LL148_RS07320 WP_002851370.1 1438449..1439036(-) (ctsX) [Campylobacter jejuni strain SHI4648]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=623009 LL148_RS07320 WP_002851370.1 1438449..1439036(-) (ctsX) [Campylobacter jejuni strain SHI4648]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCACTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1