Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LL138_RS06845 Genome accession   NZ_CP086160
Coordinates   1339746..1340714 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   A0AB36G4C9
Organism   Campylobacter jejuni strain SHI5328     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1334746..1345714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL138_RS06820 (LL138_06820) cdsA 1335656..1336381 (-) 726 WP_227944501.1 phosphatidate cytidylyltransferase -
  LL138_RS06825 (LL138_06825) - 1336390..1336728 (-) 339 WP_002852397.1 hypothetical protein -
  LL138_RS06830 (LL138_06830) - 1336730..1338037 (-) 1308 WP_002875975.1 NFACT RNA binding domain-containing protein -
  LL138_RS06835 (LL138_06835) mobA 1338099..1338674 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  LL138_RS06840 (LL138_06840) pldA 1338671..1339660 (+) 990 WP_002860788.1 phospholipase A -
  LL138_RS06845 (LL138_06845) ceuB 1339746..1340714 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  LL138_RS06850 (LL138_06850) ceuC 1340707..1341645 (+) 939 WP_227944502.1 iron chelate uptake ABC transporter family permease subunit -
  LL138_RS06855 (LL138_06855) ceuD 1341642..1342397 (+) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  LL138_RS06860 (LL138_06860) ceuB 1342410..1343402 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  LL138_RS06870 (LL138_06870) - 1343628..1344182 (-) 555 WP_002867306.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=622976 LL138_RS06845 WP_002874446.1 1339746..1340714(+) (ceuB) [Campylobacter jejuni strain SHI5328]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=622976 LL138_RS06845 WP_002874446.1 1339746..1340714(+) (ceuB) [Campylobacter jejuni strain SHI5328]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTGCTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994