Detailed information NTG0622971

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: LL138_RS05860
• Genome accession: NZ_CP086160
• Coordinates: 1138802..1139761 (+)
• Length: 319 a.a.
• NCBI ID: WP_002876195.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain SHI5328
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1133802..1144761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL138_RS05835 (LL138_05835)	-	1134151..1135173 (-)	1023	WP_002876190.1	hypothetical protein	-
LL138_RS05840 (LL138_05840)	-	1135244..1136017 (+)	774	WP_002866160.1	glycosyltransferase family 25 protein	-
LL138_RS05845 (LL138_05845)	wlaTB	1136010..1136966 (+)	957	WP_227944484.1	class E lipooligosaccharide biosynthesis protein WlaTB	-
LL138_RS05850 (LL138_05850)	wlaTC	1136963..1137922 (+)	960	WP_002876191.1	class E lipooligosaccharide biosynthesis protein WlaTC	-
LL138_RS05855 (LL138_05855)	-	1137925..1138743 (-)	819	WP_002876193.1	glycosyltransferase family 2 protein	-
LL138_RS05860 (LL138_05860)	waaF	1138802..1139761 (+)	960	WP_002876195.1	lipopolysaccharide heptosyltransferase II	Regulator
LL138_RS05865 (LL138_05865)	gmhA	1139742..1140302 (-)	561	WP_002876196.1	D-sedoheptulose 7-phosphate isomerase	-
LL138_RS05870 (LL138_05870)	rfaE1	1140299..1141684 (-)	1386	WP_002910336.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
LL138_RS05875 (LL138_05875)	rfaD	1141677..1142630 (-)	954	WP_002886910.1	ADP-glyceromanno-heptose 6-epimerase	-
LL138_RS05880 (LL138_05880)	gmhB	1142631..1143192 (-)	562	Protein_1153	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
LL138_RS05885 (LL138_05885)	-	1143273..1143575 (+)	303	WP_002852762.1	c-type cytochrome	-
LL138_RS05890 (LL138_05890)	ccoS	1143598..1143804 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36607.08 Da
• Isoelectric Point: 10.2870

>NTDB_id=622971 LL138_RS05860 WP_002876195.1 1138802..1139761(+) (waaF) [Campylobacter jejuni strain SHI5328]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=622971 LL138_RS05860 WP_002876195.1 1138802..1139761(+) (waaF) [Campylobacter jejuni strain SHI5328]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTAGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.025	99.687	0.937