Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   LL138_RS03270 Genome accession   NZ_CP086160
Coordinates   624451..624888 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain SHI5328     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 619451..629888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL138_RS08825 - 619638..619943 (+) 306 Protein_633 potassium-transporting ATPase subunit C -
  LL138_RS03245 (LL138_03245) - 620075..620582 (+) 508 Protein_634 sensor histidine kinase KdpD -
  LL138_RS03250 (LL138_03250) - 620640..621752 (+) 1113 WP_227944584.1 DUF4118 domain-containing protein -
  LL138_RS08830 - 621739..621870 (+) 132 WP_256379349.1 hypothetical protein -
  LL138_RS03255 (LL138_03255) uvrB 621865..623838 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  LL138_RS03260 (LL138_03260) - 623992..624222 (+) 231 WP_002852327.1 hypothetical protein -
  LL138_RS03265 (LL138_03265) - 624212..624454 (+) 243 WP_002854947.1 hypothetical protein -
  LL138_RS03270 (LL138_03270) Cj0683 624451..624888 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LL138_RS03275 (LL138_03275) priA 624870..626723 (+) 1854 WP_227944568.1 primosomal protein N' -
  LL138_RS03280 (LL138_03280) cipA 626733..628127 (-) 1395 WP_002860010.1 DUF2972 domain-containing protein -
  LL138_RS03285 (LL138_03285) ispG 628273..629346 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=622966 LL138_RS03270 WP_002852324.1 624451..624888(+) (Cj0683) [Campylobacter jejuni strain SHI5328]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=622966 LL138_RS03270 WP_002852324.1 624451..624888(+) (Cj0683) [Campylobacter jejuni strain SHI5328]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTAATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1