Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   GOZ34_RS10025 Genome accession   NZ_AP019712
Coordinates   2040853..2041566 (+) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain Tokyo12480     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2035853..2046566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOZ34_RS09960 (TMSFP480_18840) - 2036603..2036866 (-) 264 WP_001205732.1 hypothetical protein -
  GOZ34_RS09965 (TMSFP480_18850) - 2036875..2037135 (-) 261 WP_000291503.1 DUF1108 family protein -
  GOZ34_RS09970 (TMSFP480_18860) - 2037116..2037442 (-) 327 WP_000165375.1 DUF2482 family protein -
  GOZ34_RS09975 (TMSFP480_18870) - 2037537..2037698 (-) 162 WP_000066017.1 DUF1270 domain-containing protein -
  GOZ34_RS09980 (TMSFP480_18880) - 2037695..2038015 (-) 321 WP_001120197.1 DUF771 domain-containing protein -
  GOZ34_RS09985 (TMSFP480_18890) - 2038074..2038706 (+) 633 WP_000275058.1 hypothetical protein -
  GOZ34_RS09990 (TMSFP480_18900) - 2038721..2038861 (-) 141 WP_000939496.1 hypothetical protein -
  GOZ34_RS09995 (TMSFP480_18910) - 2038892..2039089 (-) 198 WP_001148855.1 hypothetical protein -
  GOZ34_RS10000 (TMSFP480_18920) - 2039105..2039857 (-) 753 WP_155978248.1 phage antirepressor KilAC domain-containing protein -
  GOZ34_RS10005 (TMSFP480_18930) - 2039908..2040237 (+) 330 WP_000128907.1 hypothetical protein -
  GOZ34_RS10010 (TMSFP480_18940) - 2040226..2040441 (-) 216 WP_001025874.1 Thoeris anti-defense Tad2 family protein -
  GOZ34_RS10015 (TMSFP480_18950) - 2040457..2040720 (-) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  GOZ34_RS10020 - 2040717..2040890 (-) 174 WP_001801500.1 hypothetical protein -
  GOZ34_RS10025 (TMSFP480_18960) irvR 2040853..2041566 (+) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  GOZ34_RS10030 (TMSFP480_18970) - 2041582..2042514 (+) 933 WP_000759682.1 exonuclease domain-containing protein -
  GOZ34_RS10035 (TMSFP480_18980) - 2042520..2042861 (+) 342 WP_000591749.1 hypothetical protein -
  GOZ34_RS10040 (TMSFP480_18990) - 2043065..2043247 (+) 183 WP_000705248.1 hypothetical protein -
  GOZ34_RS10045 (TMSFP480_19000) - 2043347..2043811 (+) 465 WP_000825947.1 hypothetical protein -
  GOZ34_RS10050 (TMSFP480_19010) - 2043870..2044907 (+) 1038 WP_000857185.1 tyrosine-type recombinase/integrase -
  GOZ34_RS10055 (TMSFP480_19020) sph 2044964..2045788 (+) 825 Protein_1952 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=62261 GOZ34_RS10025 WP_001031454.1 2040853..2041566(+) (irvR) [Staphylococcus aureus strain Tokyo12480]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=62261 GOZ34_RS10025 WP_001031454.1 2040853..2041566(+) (irvR) [Staphylococcus aureus strain Tokyo12480]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401

Multiple sequence alignment