Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LL024_RS07570 Genome accession   NZ_CP086100
Coordinates   1611329..1611955 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain 196     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606329..1616955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL024_RS07550 (LL024_07560) - 1606723..1608483 (-) 1761 WP_025204537.1 Lon protease family protein -
  LL024_RS07555 (LL024_07565) matP 1608670..1609122 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  LL024_RS07560 (LL024_07570) ompA 1609192..1610247 (-) 1056 WP_020884794.1 porin OmpA -
  LL024_RS07565 (LL024_07575) sulA 1610602..1611111 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  LL024_RS07570 (LL024_07580) sxy/tfoX 1611329..1611955 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  LL024_RS07575 (LL024_07585) yccS 1611912..1614074 (-) 2163 WP_020884791.1 YccS family putative transporter -
  LL024_RS07580 (LL024_07590) - 1614094..1614540 (-) 447 WP_014169434.1 YccF domain-containing protein -
  LL024_RS07585 (LL024_07595) helD 1614664..1616718 (+) 2055 WP_228175741.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=622488 LL024_RS07570 WP_020884792.1 1611329..1611955(+) (sxy/tfoX) [Enterobacter ludwigii strain 196]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=622488 LL024_RS07570 WP_020884792.1 1611329..1611955(+) (sxy/tfoX) [Enterobacter ludwigii strain 196]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGATGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTTTTAACCCTGATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGGGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCATTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577