Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LL023_RS16100 Genome accession   NZ_CP086099
Coordinates   3363174..3363800 (-) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain 197     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3358174..3368800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL023_RS16085 (LL023_16130) helD 3358411..3360465 (-) 2055 WP_228175741.1 DNA helicase IV -
  LL023_RS16090 (LL023_16135) - 3360589..3361035 (+) 447 WP_014169434.1 YccF domain-containing protein -
  LL023_RS16095 (LL023_16140) yccS 3361055..3363217 (+) 2163 WP_020884791.1 YccS family putative transporter -
  LL023_RS16100 (LL023_16145) sxy/tfoX 3363174..3363800 (-) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  LL023_RS16105 (LL023_16150) sulA 3364018..3364527 (+) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  LL023_RS16110 (LL023_16155) ompA 3364882..3365937 (+) 1056 WP_020884794.1 porin OmpA -
  LL023_RS16115 (LL023_16160) matP 3366007..3366459 (-) 453 WP_014169429.1 macrodomain Ter protein MatP -
  LL023_RS16120 (LL023_16165) - 3366646..3368406 (+) 1761 WP_025204537.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=622479 LL023_RS16100 WP_020884792.1 3363174..3363800(-) (sxy/tfoX) [Enterobacter ludwigii strain 197]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=622479 LL023_RS16100 WP_020884792.1 3363174..3363800(-) (sxy/tfoX) [Enterobacter ludwigii strain 197]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGATGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTTTTAACCCTGATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGGGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCATTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577