Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LL046_RS11095 Genome accession   NZ_CP086088
Coordinates   2184133..2185494 (-) Length   453 a.a.
NCBI ID   WP_003130563.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2179133..2190494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS11060 (LL046_11025) - 2179680..2180174 (+) 495 WP_012898594.1 GNAT family N-acetyltransferase -
  LL046_RS11065 (LL046_11030) - 2180266..2180589 (-) 324 WP_017865144.1 DUF1048 domain-containing protein -
  LL046_RS11070 (LL046_11035) - 2180576..2180923 (-) 348 WP_017865145.1 DUF1048 domain-containing protein -
  LL046_RS11075 (LL046_11040) - 2180910..2181272 (-) 363 WP_003129889.1 PadR family transcriptional regulator -
  LL046_RS11080 (LL046_11045) - 2181393..2182022 (-) 630 WP_017865146.1 hypothetical protein -
  LL046_RS11085 (LL046_11050) - 2182087..2183172 (-) 1086 WP_012898597.1 PIN/TRAM domain-containing protein -
  LL046_RS11090 (LL046_11055) - 2183403..2184089 (+) 687 WP_012898598.1 YoaK family protein -
  LL046_RS11095 (LL046_11060) radA 2184133..2185494 (-) 1362 WP_003130563.1 DNA repair protein RadA Machinery gene
  LL046_RS11100 (LL046_11065) - 2185656..2185883 (-) 228 Protein_2159 heavy-metal-associated domain-containing protein -
  LL046_RS11110 (LL046_11075) rplQ 2186699..2187079 (-) 381 WP_003130558.1 50S ribosomal protein L17 -
  LL046_RS11115 (LL046_11080) - 2187098..2188036 (-) 939 WP_003130557.1 DNA-directed RNA polymerase subunit alpha -
  LL046_RS11120 (LL046_11085) rpsK 2188084..2188467 (-) 384 WP_010906297.1 30S ribosomal protein S11 -
  LL046_RS11125 (LL046_11090) rpsM 2188488..2188853 (-) 366 WP_003130555.1 30S ribosomal protein S13 -
  LL046_RS11130 (LL046_11095) rpmJ 2188871..2188987 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  LL046_RS11135 (LL046_11100) infA 2189041..2189259 (-) 219 WP_003130554.1 translation initiation factor IF-1 -
  LL046_RS11140 (LL046_11105) - 2189556..2190203 (-) 648 WP_010906298.1 adenylate kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49893.28 Da        Isoelectric Point: 5.1748

>NTDB_id=622445 LL046_RS11095 WP_003130563.1 2184133..2185494(-) (radA) [Lactococcus lactis subsp. lactis strain EIP13A]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPLKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIQVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=622445 LL046_RS11095 WP_003130563.1 2184133..2185494(-) (radA) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGGCGAAGAAAAAATCATCATTTGTTTGTCAAAATTGTGGCTATAAGTCTGCAAAATACTTAGGACGTTGTCCAAACTG
TGGCGAATGGTCTTCTTTTGTTGAAGAAGTTGAAGTCCAAGAAGTTAAAAATCAACGTGTTTCAATGACTGGCGAACGTT
CAAAACCATTGAAGCTAGATGAAGTTGAATTATTTGATACTCCTAGGATTGAAACGGACCTAGATGAATTTAATCGTGTA
TTAGGAGGGGGCGTCGTTCCTGGTTCATTAGTTCTGATTGGGGGAGATCCTGGGATAGGTAAATCAACCTTACTTTTACA
GGTTTCCACTCAATTGGCTTCTAGAGGGCGTGTGCTTTATGTGAGTGGTGAAGAATCAGCCCAACAAATTAAACTAAGAG
CTGAGCGTTTAGGAGATATTGACCGTGACTTTTATCTCTATGCTGAAACAAATATGCAGTCGATTCGTGCAGAAGTTGAG
CGTTTAAAACCTAACTTCTTAATTATTGATTCCATTCAAACAATCATGACACCAGAAATTCAATCAACTCAAGGCTCTGT
AAGTCAAGTTCGTGAAGTGACTGGAGAATTGATGCAAATTGCTAAAACGAATGATATTGCGACTTTTATTGTTGGTCATG
TGACTAAAGAAGGACAGCTGGCTGGTCCAAGGATGTTGGAGCACATGGTTGATACGGTGCTGTATTTTGAAGGAGAACGA
AATAATACATTTAGAATTCTTCGTGCTGTAAAAAACCGTTTTGGTTCAACTAATGAAATTGGAATTTTTGAGATGCAGGG
TCATGGCTTGGTCGAAGTGACTAATCCCTCAGAGGTCTTTTTAGAAGAACGCTTAGAGGGCTCAACTGGATCTGCAATTG
TTTGTGCACTTGAGGGAACACGGCCTATACTAGTTGAAATACAAGCACTGACGACACCGACAATGTTTGGAAATGCTAAA
AGGACGACCTCAGGCCTAGATTTTAACCGTGTAAGTTTAATTATGGCGGTGCTTGAAAAGAGAACGGGGCTTTTGATGCA
AAATCAAGATGCCTACCTCAAATCTGCGGGGGGAGTAAAATTGGATGAGCCAGCCATTGACCTCGCGGTTGCGGTTGCTG
TGGCTTCAAGTTATAAAGAACTTCCAACAGATGCGCGTGAATGTTTTATTGGTGAAATTGGTTTAACGGGTGAAATTCGT
CGGGTGACCCGAATTGAACAAAGATTAAATGAAGCTGCAAAACTAGGTTTTAAAAAAGTATATGCTCCTAAAAATTCAAT
TGTAGGAATTGATATTCCTGAACAGATTCAAGTGATTGGAGTAACAACTTTAACTGAATGTTTAAAACTAGTCTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.236

100

0.812
  radA Streptococcus pneumoniae D39

81.236

100

0.812
  radA Streptococcus pneumoniae R6

81.236

100

0.812
  radA Streptococcus pneumoniae TIGR4

81.236

100

0.812
  radA Streptococcus mitis SK321

81.236

100

0.812
  radA Streptococcus mitis NCTC 12261

81.015

100

0.81
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.62