Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LL045_RS11610 Genome accession   NZ_CP086083
Coordinates   2367210..2368238 (-) Length   342 a.a.
NCBI ID   WP_058206118.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2362210..2373238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS11590 (LL045_11560) - 2362459..2363385 (-) 927 WP_229049653.1 radical SAM protein -
  LL045_RS11595 (LL045_11565) - 2363488..2364345 (-) 858 WP_394530231.1 transcriptional regulator -
  LL045_RS11600 (LL045_11570) - 2364456..2365595 (-) 1140 WP_012898644.1 MFS transporter -
  LL045_RS11605 (LL045_11575) kwcM 2365592..2366824 (-) 1233 WP_394530232.1 KxxxW cyclic peptide radical SAM maturase -
  LL045_RS11610 (LL045_11580) sepM 2367210..2368238 (-) 1029 WP_058206118.1 SepM family pheromone-processing serine protease Regulator
  LL045_RS11615 (LL045_11585) coaD 2368225..2368722 (-) 498 WP_010906348.1 pantetheine-phosphate adenylyltransferase -
  LL045_RS11620 (LL045_11590) rsmD 2368770..2369309 (-) 540 WP_394530233.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LL045_RS11625 (LL045_11595) - 2369478..2370698 (-) 1221 WP_038602963.1 MFS transporter -
  LL045_RS11630 (LL045_11600) lmrP 2370781..2372007 (-) 1227 WP_118263642.1 multidrug efflux MFS transporter LmrP -
  LL045_RS11635 (LL045_11605) - 2372195..2372689 (+) 495 WP_058206114.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37362.96 Da        Isoelectric Point: 9.9183

>NTDB_id=622409 LL045_RS11610 WP_058206118.1 2367210..2368238(-) (sepM) [Lactococcus lactis subsp. lactis strain EIP20A]
MKKNKKINPKLKWGISIGLIVVALLALFYPTSYYVEMPGTTEPLGKMVKVEGKKDEHKGDFFLTTVQIARANLATMIYSH
FNSFTSIYSEQEMTGGLNDAQFNRVNQFYMETAQNTAIYQAFKLANKPYELKYEGVYVLDIAKNSTFKNKLELADTITAV
NGQQFTSSADMIAYVSKQKVGDSVTIEYTRIDGTKHKSTGKYIKIANGKTGIGISLVDHTEVVTNPKVTVNAGSIGGPSA
GMMFTLEIYSQLTGKDLRNGREIAGTGTIEHDGSIGQIGGVDKKVATASKEGAKVFLVPDSGTKKESSNNYLGAKAAAKK
LKTKMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=622409 LL045_RS11610 WP_058206118.1 2367210..2368238(-) (sepM) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGAAAAAAAATAAAAAAATTAATCCCAAATTAAAATGGGGAATCTCGATTGGTCTAATTGTTGTTGCCCTTTTAGCTTT
ATTTTATCCAACAAGTTACTATGTGGAAATGCCCGGAACAACCGAGCCTTTAGGGAAAATGGTCAAAGTTGAAGGCAAAA
AAGATGAACATAAAGGTGATTTTTTCCTGACGACTGTCCAAATTGCACGAGCAAATCTTGCTACAATGATTTACAGCCAT
TTTAATAGTTTTACAAGCATTTACAGTGAGCAAGAAATGACTGGTGGACTTAACGACGCACAGTTCAACCGTGTCAACCA
GTTTTACATGGAAACGGCACAGAATACAGCGATTTATCAAGCTTTTAAATTAGCTAATAAACCTTATGAACTTAAATATG
AAGGCGTTTATGTCCTTGATATTGCCAAAAATTCGACCTTTAAAAATAAGCTAGAACTTGCAGATACGATTACAGCAGTC
AATGGTCAACAGTTTACATCAAGTGCCGACATGATTGCTTATGTTTCCAAACAAAAAGTCGGTGATTCAGTAACGATTGA
ATACACGAGAATTGACGGCACAAAGCACAAGTCAACTGGCAAATACATCAAAATTGCTAATGGTAAAACAGGAATTGGGA
TTAGCCTAGTTGACCATACTGAAGTCGTGACGAATCCGAAAGTTACTGTCAACGCGGGTTCAATCGGTGGTCCCTCTGCG
GGGATGATGTTTACACTAGAAATTTACAGTCAGTTGACAGGAAAAGATTTGCGAAACGGTCGCGAAATTGCTGGAACTGG
AACGATTGAACACGACGGAAGCATTGGTCAAATCGGCGGTGTTGATAAAAAAGTAGCCACAGCGAGCAAAGAAGGGGCAA
AGGTCTTCTTAGTGCCTGACTCAGGCACCAAAAAGGAAAGTAGCAACAATTACCTTGGAGCCAAAGCCGCCGCTAAAAAA
CTAAAAACGAAGATGAAAATCGTTCCCGTCAAAACTATTCAGGACGCTTTAGATTATTTAGAAAAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(227-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.696

100

0.491