Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LL045_RS11150 Genome accession   NZ_CP086083
Coordinates   2283149..2284510 (-) Length   453 a.a.
NCBI ID   WP_003130563.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2278149..2289510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS11115 (LL045_11085) - 2278697..2279191 (+) 495 WP_021723080.1 GNAT family N-acetyltransferase -
  LL045_RS11120 (LL045_11090) - 2279282..2279605 (-) 324 WP_098394201.1 DUF1048 domain-containing protein -
  LL045_RS11125 (LL045_11095) - 2279592..2279939 (-) 348 WP_394530206.1 DUF1048 domain-containing protein -
  LL045_RS11130 (LL045_11100) - 2279926..2280288 (-) 363 WP_394530207.1 PadR family transcriptional regulator -
  LL045_RS11135 (LL045_11105) - 2280409..2281038 (-) 630 WP_023188601.1 hypothetical protein -
  LL045_RS11140 (LL045_11110) - 2281103..2282188 (-) 1086 WP_038602323.1 PIN/TRAM domain-containing protein -
  LL045_RS11145 (LL045_11115) - 2282419..2283105 (+) 687 WP_050573393.1 YoaK family protein -
  LL045_RS11150 (LL045_11120) radA 2283149..2284510 (-) 1362 WP_003130563.1 DNA repair protein RadA Machinery gene
  LL045_RS11160 (LL045_11130) rplQ 2284971..2285351 (-) 381 WP_003130558.1 50S ribosomal protein L17 -
  LL045_RS11165 (LL045_11135) - 2285370..2286308 (-) 939 WP_003130557.1 DNA-directed RNA polymerase subunit alpha -
  LL045_RS11170 (LL045_11140) rpsK 2286356..2286739 (-) 384 WP_010906297.1 30S ribosomal protein S11 -
  LL045_RS11175 (LL045_11145) rpsM 2286760..2287125 (-) 366 WP_003130555.1 30S ribosomal protein S13 -
  LL045_RS11180 (LL045_11150) rpmJ 2287143..2287259 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  LL045_RS11185 (LL045_11155) infA 2287313..2287531 (-) 219 WP_003130554.1 translation initiation factor IF-1 -
  LL045_RS11190 (LL045_11160) - 2287830..2288477 (-) 648 WP_010906298.1 adenylate kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49893.28 Da        Isoelectric Point: 5.1748

>NTDB_id=622396 LL045_RS11150 WP_003130563.1 2283149..2284510(-) (radA) [Lactococcus lactis subsp. lactis strain EIP20A]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPLKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIQVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=622396 LL045_RS11150 WP_003130563.1 2283149..2284510(-) (radA) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGGCGAAGAAAAAATCATCATTTGTTTGTCAAAATTGTGGCTATAAGTCTGCAAAATACTTAGGACGTTGTCCAAACTG
TGGCGAATGGTCTTCTTTTGTTGAAGAAGTTGAAGTCCAAGAAGTTAAAAATCAACGTGTTTCAATGACTGGCGAACGTT
CAAAACCATTGAAGCTAGATGAAGTTGAATTATTTGATACTCCTCGGATTGAAACGGACTTAGATGAATTTAATCGTGTA
TTAGGAGGGGGTGTTGTTCCTGGTTCATTAGTTCTGATTGGGGGAGACCCTGGGATAGGTAAATCAACCTTACTTTTACA
GGTTTCTACTCAATTGGCTTCTAGAGGTCGTGTGCTTTATGTGAGTGGTGAAGAATCAGCCCAACAAATTAAACTAAGAG
CTGAGCGTTTGGGAGATATTGACCGAGACTTCTATCTCTATGCTGAAACAAATATGCAGTCGATTCGTGCAGAAGTTGAG
CGTTTAAAACCTAACTTCTTAATTATTGATTCCATTCAAACAATTATGACACCAGAAATTCAATCAACTCAAGGCTCAGT
AAGTCAAGTTCGTGAAGTGACTGGAGAATTGATGCAAATTGCTAAAACGAATGATATTGCGACCTTTATTGTTGGTCATG
TGACTAAAGAAGGTCAGCTAGCTGGGCCAAGGATGTTAGAGCATATGGTTGATACGGTGCTGTATTTTGAAGGAGAACGA
AATAATACATTTAGAATTCTTCGTGCTGTAAAAAACCGTTTTGGTTCAACTAATGAAATTGGAATTTTTGAGATGCAGGG
TCATGGCCTGGTCGAAGTGACTAATCCCTCAGAGGTCTTTTTAGAAGAACGTTTAGAGGGCTCAACTGGATCTGCAATTG
TTTGTGCACTTGAAGGAACACGGCCCATATTAGTTGAAATACAAGCACTGACGACACCGACAATGTTTGGAAATGCTAAA
AGGACGACCTCAGGCCTAGATTTTAACCGTGTAAGTTTAATTATGGCGGTGCTTGAGAAGAGAACGGGGCTTTTGATGCA
AAATCAAGATGCCTACCTCAAATCTGCGGGGGGAGTAAAATTGGATGAGCCAGCCATTGACCTCGCGGTCGCGGTCGCTG
TGGCTTCAAGTTATAAAGAACTTCCAACAGATGCGCGTGAATGTTTTATTGGTGAAATTGGTTTAACGGGTGAAATTCGT
CGGGTGACCCGAATTGAACAAAGATTGAATGAAGCTGCAAAACTAGGGTTTAAAAAAGTATATGCTCCAAAAAATTCAAT
TGTAGGGATTGATATTCCTGAACAGATTCAAGTGATTGGAGTAACAACTTTAACTGAATGTTTAAAACTAGTCTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.236

100

0.812
  radA Streptococcus pneumoniae D39

81.236

100

0.812
  radA Streptococcus pneumoniae R6

81.236

100

0.812
  radA Streptococcus pneumoniae TIGR4

81.236

100

0.812
  radA Streptococcus mitis SK321

81.236

100

0.812
  radA Streptococcus mitis NCTC 12261

81.015

100

0.81
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.62