Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LLH06_RS19625 Genome accession   NZ_CP086068
Coordinates   4574998..4576434 (-) Length   478 a.a.
NCBI ID   WP_228170987.1    Uniprot ID   -
Organism   Mucilaginibacter daejeonensis strain KACC 14964     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4569998..4581434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLH06_RS19600 (LLH06_19660) - 4570547..4571098 (-) 552 WP_228170982.1 AAA family ATPase -
  LLH06_RS19605 (LLH06_19665) - 4571144..4571875 (-) 732 WP_228170983.1 LytTR family DNA-binding domain-containing protein -
  LLH06_RS19610 (LLH06_19670) - 4571916..4572932 (-) 1017 WP_228170984.1 sensor histidine kinase -
  LLH06_RS19615 (LLH06_19675) - 4573110..4574177 (+) 1068 WP_228170985.1 DUF5700 domain-containing putative Zn-dependent protease -
  LLH06_RS19620 (LLH06_19680) - 4574298..4574993 (+) 696 WP_228170986.1 SIMPL domain-containing protein -
  LLH06_RS19625 (LLH06_19685) radA 4574998..4576434 (-) 1437 WP_228170987.1 DNA repair protein RadA Machinery gene
  LLH06_RS19630 (LLH06_19690) - 4576809..4577360 (-) 552 WP_228170988.1 NUDIX hydrolase -
  LLH06_RS19635 (LLH06_19695) - 4577486..4578310 (-) 825 WP_228170989.1 YgcG family protein -
  LLH06_RS19640 (LLH06_19700) - 4578325..4578759 (-) 435 WP_228170990.1 TPM domain-containing protein -
  LLH06_RS19645 (LLH06_19705) - 4578839..4579417 (-) 579 WP_228170991.1 LemA family protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 52147.93 Da        Isoelectric Point: 6.4197

>NTDB_id=622303 LLH06_RS19625 WP_228170987.1 4574998..4576434(-) (radA) [Mucilaginibacter daejeonensis strain KACC 14964]
MAKTKSAYFCQSCGYESPKWLGKCPACSQWNTFVEEVIEKPNAAIPDWKAPGGSTSMQRANKAVPVSQISFAEEHRILTP
DNELNRVLGGGIVAGSLVLIGGEPGIGKSTLMLQIAMSMPAAKILYVSGEESDRQIKMRAERIAAPQSPKSGVELQNGTT
GCFVLTETSTQNIFKQIEILQPDMVIIDSIQTLYSAHIESTPGSVSQVRECTAELLRFAKESSTPVFLIGHITKDGMIAG
PKILEHMVDTVLQFEGDRHHVYRILRAIKNRFGSASELGIYEMQGAGLREVSNPSEILLSQRDEALSGITISATLEGLRP
MLIETQALVSTSAYGTPQRSATGFDTRRMNMLLAVLEKRCGFRLGSQDVFLNITGGIRVEDPAIDLGLAAAIISSHEDMP
ISSKICFAGELGLSGEVRAVNRIEQRIAEAQKLGFEQIFISKYNLPSGKDKHQLDLSHYKIEVKAVSRIEEVFGLLFG

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=622303 LLH06_RS19625 WP_228170987.1 4574998..4576434(-) (radA) [Mucilaginibacter daejeonensis strain KACC 14964]
TTGGCTAAAACTAAGTCGGCATATTTTTGTCAGAGCTGCGGCTACGAGTCGCCCAAGTGGTTAGGTAAATGCCCGGCCTG
CTCGCAGTGGAACACCTTTGTAGAGGAAGTGATCGAGAAACCCAACGCGGCCATCCCTGATTGGAAGGCACCGGGTGGTT
CTACCTCTATGCAGCGGGCTAACAAGGCCGTACCGGTATCACAGATCAGTTTTGCCGAGGAGCACCGCATCCTTACGCCC
GACAACGAGCTCAACCGCGTACTGGGCGGCGGCATCGTGGCAGGATCGCTGGTGCTGATCGGTGGTGAGCCGGGCATCGG
TAAATCGACCCTGATGTTGCAGATCGCCATGAGCATGCCTGCCGCCAAGATCCTGTATGTATCGGGCGAGGAAAGCGACC
GCCAGATCAAGATGCGGGCCGAGCGTATAGCTGCCCCACAGTCCCCTAAAAGTGGAGTTGAATTACAGAACGGCACCACA
GGCTGCTTCGTGCTGACCGAGACATCTACCCAGAACATCTTCAAACAGATCGAGATCCTGCAGCCCGATATGGTGATCAT
CGATTCGATACAGACCTTGTATTCGGCCCACATCGAGTCGACGCCGGGCAGCGTATCGCAGGTACGTGAGTGTACGGCCG
AACTGTTGCGTTTTGCCAAGGAAAGCTCGACGCCGGTGTTCCTGATCGGGCACATTACCAAGGATGGCATGATCGCCGGA
CCCAAGATACTGGAGCACATGGTAGATACCGTGCTACAATTTGAGGGCGACCGTCACCACGTTTACCGCATTTTACGGGC
CATTAAAAATCGTTTTGGTTCGGCATCAGAGCTGGGTATCTATGAGATGCAGGGCGCTGGTTTGCGCGAGGTGTCCAACC
CGTCGGAGATACTGTTATCGCAGCGTGATGAGGCCTTAAGCGGCATCACGATCAGTGCCACGTTGGAAGGCCTGAGGCCA
ATGCTGATCGAGACACAGGCTTTGGTGAGTACCTCAGCATATGGGACACCGCAGCGCTCGGCCACCGGATTTGACACCCG
CCGCATGAACATGTTGTTGGCCGTATTAGAGAAACGTTGTGGGTTCCGCCTGGGATCGCAGGATGTGTTCCTGAACATCA
CAGGTGGCATCAGGGTAGAGGACCCGGCCATCGACCTGGGTTTGGCCGCGGCCATCATTTCCTCGCACGAGGATATGCCC
ATATCATCAAAGATCTGTTTTGCGGGAGAGTTGGGGCTATCGGGCGAGGTGAGGGCCGTTAACCGTATAGAGCAACGAAT
TGCCGAAGCCCAGAAACTGGGCTTCGAGCAAATATTCATTTCCAAGTATAATCTGCCATCGGGTAAGGATAAGCATCAGC
TCGACCTGTCACATTACAAGATCGAGGTGAAGGCCGTGAGCCGTATTGAGGAGGTGTTCGGGCTGTTGTTCGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-444)

AAA domain (AAA_25)

(70-237)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.02

93.515

0.496
  radA Streptococcus pneumoniae Rx1

47.917

100

0.481
  radA Streptococcus pneumoniae D39

47.917

100

0.481
  radA Streptococcus pneumoniae R6

47.917

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.917

100

0.481
  radA Streptococcus mitis NCTC 12261

47.708

100

0.479
  radA Streptococcus mitis SK321

47.708

100

0.479