Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LLJ08_RS16315 Genome accession   NZ_CP086067
Coordinates   3494972..3495523 (+) Length   183 a.a.
NCBI ID   WP_003302169.1    Uniprot ID   A0A3R8U6I6
Organism   Stutzerimonas chloritidismutans strain 6L11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3489972..3500523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJ08_RS16290 (LLJ08_16295) speA 3489999..3491912 (-) 1914 WP_014821432.1 arginine decarboxylase -
  LLJ08_RS16295 (LLJ08_16300) - 3492035..3492406 (-) 372 WP_042927694.1 translation initiation factor Sui1 -
  LLJ08_RS16300 (LLJ08_16305) thiO 3492555..3493664 (-) 1110 WP_228207479.1 glycine oxidase ThiO -
  LLJ08_RS16305 (LLJ08_16310) - 3493817..3494314 (+) 498 WP_003302173.1 GspH/FimT family pseudopilin -
  LLJ08_RS16310 (LLJ08_16315) - 3494472..3494963 (+) 492 WP_003302171.1 GspH/FimT family pseudopilin -
  LLJ08_RS16315 (LLJ08_16320) pilV 3494972..3495523 (+) 552 WP_003302169.1 type IV pilus modification protein PilV Machinery gene
  LLJ08_RS16320 (LLJ08_16325) - 3495520..3496371 (+) 852 WP_003302166.1 PilW family protein -
  LLJ08_RS16325 (LLJ08_16330) - 3496368..3496973 (+) 606 WP_179484770.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19938.78 Da        Isoelectric Point: 4.5302

>NTDB_id=622287 LLJ08_RS16315 WP_003302169.1 3494972..3495523(+) (pilV) [Stutzerimonas chloritidismutans strain 6L11]
MKTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAIVLAGDLIEIVRAHPKELFDTSPPQFPMNSGLKD
SSIFYKAAGDEFADRESCVASPTRIAKTAKELRDCWADKVEALLPGGSELFVSDVYVCRSSIAGDCDDKGSMLEIRLAWQ
VREGACLDAENSDVCSYTVRVEP

Nucleotide


Download         Length: 552 bp        

>NTDB_id=622287 LLJ08_RS16315 WP_003302169.1 3494972..3495523(+) (pilV) [Stutzerimonas chloritidismutans strain 6L11]
ATGAAAACCAATAAAGGCTTCAGCCTGATCGAGGTACTGGTGGCCCTACTGCTAACCACCATCGGTGTACTCGGCATGGT
GGCTCTGCAGGGACGCAGCATCCAATACACACAGGACTCGGTACAGCGCAACACGGCCATCGTTCTGGCCGGCGACTTGA
TCGAAATTGTAAGAGCGCACCCAAAAGAGCTGTTCGATACTTCGCCACCGCAGTTCCCTATGAACAGCGGGTTAAAAGAC
AGCTCCATTTTCTACAAAGCCGCCGGCGATGAGTTCGCCGACCGCGAGAGCTGCGTGGCGAGTCCGACCCGAATAGCAAA
AACAGCAAAAGAACTGCGCGACTGCTGGGCCGACAAGGTTGAAGCATTGTTACCAGGCGGCAGCGAGCTATTCGTTAGCG
ACGTATACGTTTGCCGCAGCTCTATTGCAGGTGATTGCGATGACAAGGGTTCAATGCTTGAAATTCGCCTGGCCTGGCAA
GTTCGTGAAGGCGCCTGCCTTGATGCGGAAAACTCCGATGTTTGCAGCTATACAGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R8U6I6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

50.82

100

0.508