Detailed information NTG0622256

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: M5T42_RS21875
• Genome accession: NZ_CP103465
• Coordinates: 4524912..4525937 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli O25b:H4-ST131 strain 5392
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4519912..4530937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5T42_RS21855 (M5T42_21855)	metJ	4521097..4521414 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
M5T42_RS21860 (M5T42_21860)	yiiX	4521474..4522082 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
M5T42_RS21865 (M5T42_21865)	rpmE	4522143..4522355 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
M5T42_RS21870 (M5T42_21870)	priA	4522558..4524756 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
M5T42_RS21875 (M5T42_21875)	cytR	4524912..4525937 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
M5T42_RS21880 (M5T42_21880)	ftsN	4526029..4526988 (+)	960	WP_000068834.1	cell division protein FtsN	-
M5T42_RS21885 (M5T42_21885)	hslV	4527081..4527611 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
M5T42_RS21890 (M5T42_21890)	hslU	4527621..4528952 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
M5T42_RS21895 (M5T42_21895)	menA	4529019..4529945 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
M5T42_RS21900 (M5T42_21900)	rraA	4530038..4530523 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
M5T42_RS21905 (M5T42_21905)	zapB	4530608..4530853 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=622256 M5T42_RS21875 WP_000644908.1 4524912..4525937(+) (cytR) [Escherichia coli O25b:H4-ST131 strain 5392]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=622256 M5T42_RS21875 WP_000644908.1 4524912..4525937(+) (cytR) [Escherichia coli O25b:H4-ST131 strain 5392]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625