Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LK685_RS21460 Genome accession   NZ_CP086061
Coordinates   4118596..4118886 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus sp. BC1-43     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4113596..4123886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS21445 (LK685_21450) - 4113791..4115104 (-) 1314 WP_161476523.1 ubiquitin-like domain-containing protein -
  LK685_RS21450 (LK685_21455) - 4115260..4116027 (-) 768 WP_014475570.1 TatD family hydrolase -
  LK685_RS21455 (LK685_21460) metG 4116107..4118101 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  LK685_RS21460 (LK685_21465) abrB 4118596..4118886 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  LK685_RS21465 (LK685_21470) rsmI 4118935..4119813 (-) 879 WP_038428262.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LK685_RS21470 (LK685_21475) - 4119788..4120087 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  LK685_RS21475 (LK685_21480) - 4120074..4120817 (-) 744 WP_015715095.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LK685_RS21480 (LK685_21485) yabA 4120876..4121235 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  LK685_RS21485 (LK685_21490) ricT 4121250..4122077 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  LK685_RS21490 (LK685_21495) holB 4122080..4123069 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  LK685_RS21495 (LK685_21500) - 4123081..4123521 (-) 441 WP_009966249.1 YaaR family protein -
  LK685_RS21500 (LK685_21505) darA 4123534..4123863 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=622219 LK685_RS21460 WP_003226760.1 4118596..4118886(+) (abrB) [Bacillus sp. BC1-43]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=622219 LK685_RS21460 WP_003226760.1 4118596..4118886(+) (abrB) [Bacillus sp. BC1-43]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1