Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LK685_RS19735 Genome accession   NZ_CP086061
Coordinates   3796925..3797374 (+) Length   149 a.a.
NCBI ID   WP_229762536.1    Uniprot ID   -
Organism   Bacillus sp. BC1-43     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3791925..3802374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS19715 (LK685_19720) hxlR 3793136..3793498 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  LK685_RS19720 (LK685_19725) hxlA 3793730..3794362 (+) 633 WP_122895017.1 3-hexulose-6-phosphate synthase -
  LK685_RS19725 (LK685_19730) hxlB 3794368..3794925 (+) 558 WP_017696129.1 6-phospho-3-hexuloisomerase -
  LK685_RS19730 (LK685_19735) tlpC 3795036..3796757 (+) 1722 WP_229762535.1 methyl-accepting chemotaxis protein TlpC -
  LK685_RS19735 (LK685_19740) nucA/comI 3796925..3797374 (+) 450 WP_229762536.1 DNA-entry nuclease Machinery gene
  LK685_RS19740 (LK685_19745) nin/comJ 3797401..3797799 (+) 399 WP_128992392.1 DNA-entry nuclease inhibitor Regulator
  LK685_RS19745 (LK685_19750) bglC 3797836..3799269 (-) 1434 WP_128992391.1 6-phospho-beta-glucosidase -
  LK685_RS19750 (LK685_19755) - 3799342..3800070 (-) 729 WP_128992390.1 AAA family ATPase -
  LK685_RS19755 (LK685_19760) - 3800089..3800430 (-) 342 WP_032724911.1 DUF3147 family protein -
  LK685_RS19760 (LK685_19765) - 3800418..3800840 (-) 423 WP_174616579.1 MarR family transcriptional regulator -
  LK685_RS19765 (LK685_19770) - 3800968..3801300 (-) 333 WP_229762537.1 YckD family protein -
  LK685_RS19770 (LK685_19775) - 3801382..3801837 (-) 456 WP_229762538.1 RDD family protein -
  LK685_RS19775 (LK685_19780) - 3801856..3802044 (-) 189 Protein_3887 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16426.32 Da        Isoelectric Point: 4.4397

>NTDB_id=622214 LK685_RS19735 WP_229762536.1 3796925..3797374(+) (nucA/comI) [Bacillus sp. BC1-43]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETANHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=622214 LK685_RS19735 WP_229762536.1 3796925..3797374(+) (nucA/comI) [Bacillus sp. BC1-43]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAATCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98