Detailed information NTG0062221

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: N135_RS05935
• Genome accession: NC_022362
• Coordinates: 1122492..1123451 (+)
• Length: 319 a.a.
• NCBI ID: WP_002875425.1
• Uniprot ID: -
• Organism: Campylobacter jejuni subsp. jejuni 00-2425
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1117492..1128451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N135_RS05910 (N135_01179)	neuC	1118057..1119172 (+)	1116	WP_002858400.1	UDP-N-acetylglucosamine 2-epimerase	-
N135_RS09650	-	1119169..1120083 (+)	915	Protein_1147	beta-1,4-N-acetylgalactosaminyltransferase	-
N135_RS09655	-	1120117..1120779 (+)	663	WP_002881429.1	N-acylneuraminate cytidylyltransferase	-
N135_RS05925 (N135_02190)	-	1120774..1121625 (-)	852	WP_014516804.1	glycosyltransferase	-
N135_RS05930 (N135_01183)	waaV	1121609..1122433 (-)	825	WP_002858096.1	glycosyltransferase family 2 protein	-
N135_RS05935 (N135_01184)	waaF	1122492..1123451 (+)	960	WP_002875425.1	lipopolysaccharide heptosyltransferase II	Regulator
N135_RS05940 (N135_01185)	gmhA	1123432..1123992 (-)	561	WP_002858021.1	D-sedoheptulose 7-phosphate isomerase	-
N135_RS05945 (N135_01186)	rfaE1	1123989..1125374 (-)	1386	WP_002858114.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
N135_RS05950 (N135_01187)	rfaD	1125367..1126320 (-)	954	WP_002858041.1	ADP-glyceromanno-heptose 6-epimerase	-
N135_RS05955 (N135_01188)	gmhB	1126321..1126881 (-)	561	WP_002853963.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
N135_RS05960 (N135_01189)	-	1126963..1127265 (+)	303	WP_002852762.1	cytochrome c	-
N135_RS05965 (N135_01190)	ccoS	1127288..1127494 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36734.30 Da
• Isoelectric Point: 10.2412

>NTDB_id=62221 N135_RS05935 WP_002875425.1 1122492..1123451(+) (waaF) [Campylobacter jejuni subsp. jejuni 00-2425]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide

• Length: 960 bp

>NTDB_id=62221 N135_RS05935 WP_002875425.1 1122492..1123451(+) (waaF) [Campylobacter jejuni subsp. jejuni 00-2425]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	100	100	1