Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LK685_RS17175 Genome accession   NZ_CP086061
Coordinates   3275825..3276619 (-) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus sp. BC1-43     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3270825..3281619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS17140 (LK685_17145) ephM 3271667..3272527 (-) 861 WP_229762469.1 epoxide hydrolase EphM -
  LK685_RS17145 (LK685_17150) spdL 3272514..3272846 (-) 333 WP_024573182.1 SdpC immunity protein SpdL -
  LK685_RS17150 (LK685_17155) - 3272931..3273449 (-) 519 WP_003243363.1 SH3 domain-containing protein -
  LK685_RS17155 (LK685_17160) - 3273594..3273863 (-) 270 WP_003243789.1 YfhJ family protein -
  LK685_RS17160 (LK685_17165) - 3273988..3274140 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  LK685_RS17165 (LK685_17170) - 3274173..3275366 (-) 1194 WP_072692836.1 MFS transporter -
  LK685_RS17170 (LK685_17175) - 3275503..3275823 (-) 321 WP_029726843.1 YfhH family protein -
  LK685_RS17175 (LK685_17180) recX 3275825..3276619 (-) 795 WP_029726844.1 recombination regulator RecX Regulator
  LK685_RS17180 (LK685_17185) - 3276708..3277619 (+) 912 WP_229762470.1 TIGR01777 family oxidoreductase -
  LK685_RS17185 (LK685_17190) - 3277674..3277784 (+) 111 WP_003223230.1 YfhE family protein -
  LK685_RS17190 (LK685_17195) - 3277851..3278042 (+) 192 WP_003233561.1 YfhD family protein -
  LK685_RS17195 (LK685_17200) - 3278081..3278665 (-) 585 WP_129092338.1 nitroreductase -
  LK685_RS17200 (LK685_17205) - 3278753..3279634 (-) 882 WP_003233566.1 PhzF family phenazine biosynthesis isomerase -
  LK685_RS17205 (LK685_17210) - 3279749..3280780 (-) 1032 WP_003243057.1 iron ABC transporter permease -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=622208 LK685_RS17175 WP_029726844.1 3275825..3276619(-) (recX) [Bacillus sp. BC1-43]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=622208 LK685_RS17175 WP_029726844.1 3275825..3276619(-) (recX) [Bacillus sp. BC1-43]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTTTGGATGATAAATACGCCTT
CAGTGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGATCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGGGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996