Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LK685_RS16110 Genome accession   NZ_CP086061
Coordinates   3084594..3085172 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus sp. BC1-43     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3079594..3090172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS16075 (LK685_16080) lepB 3079599..3080105 (-) 507 WP_003233128.1 signal peptidase I -
  LK685_RS16080 (LK685_16085) - 3080107..3080730 (-) 624 WP_010886465.1 VTT domain-containing protein -
  LK685_RS16085 (LK685_16090) - 3080882..3081253 (+) 372 WP_014476361.1 hypothetical protein -
  LK685_RS16090 (LK685_16095) - 3081452..3081652 (+) 201 WP_229762445.1 DUF3311 domain-containing protein -
  LK685_RS16095 (LK685_16100) - 3081649..3083118 (+) 1470 WP_229762446.1 sodium:solute symporter -
  LK685_RS16100 (LK685_16105) - 3083162..3083431 (-) 270 WP_229762447.1 excalibur calcium-binding domain-containing protein -
  LK685_RS16105 (LK685_16110) - 3083648..3084547 (+) 900 WP_229762448.1 SDR family oxidoreductase -
  LK685_RS16110 (LK685_16115) comK 3084594..3085172 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  LK685_RS16115 (LK685_16120) - 3085465..3085698 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  LK685_RS16120 (LK685_16125) - 3085726..3086583 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  LK685_RS16125 (LK685_16130) - 3086695..3088224 (+) 1530 WP_229762449.1 FAD-dependent oxidoreductase -
  LK685_RS16130 (LK685_16135) hemAT 3088363..3089661 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=622203 LK685_RS16110 WP_003245329.1 3084594..3085172(-) (comK) [Bacillus sp. BC1-43]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=622203 LK685_RS16110 WP_003245329.1 3084594..3085172(-) (comK) [Bacillus sp. BC1-43]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1