Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   LK685_RS15530 Genome accession   NZ_CP086061
Coordinates   2971233..2972354 (-) Length   373 a.a.
NCBI ID   WP_003232938.1    Uniprot ID   -
Organism   Bacillus sp. BC1-43     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 2966233..2977354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS15505 (LK685_15510) cwlQ 2966372..2967106 (+) 735 WP_264099675.1 bifunctional muramidase/murein lytic transglycosylase -
  LK685_RS15510 (LK685_15515) - 2967361..2967759 (+) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  LK685_RS15515 (LK685_15520) spxH 2967756..2968655 (+) 900 WP_024573348.1 protease adaptor protein SpxH -
  LK685_RS15520 (LK685_15525) - 2968969..2969136 (+) 168 WP_003244944.1 hypothetical protein -
  LK685_RS15525 (LK685_15530) pepF 2969174..2971003 (-) 1830 WP_229762425.1 oligoendopeptidase F -
  LK685_RS15530 (LK685_15535) coiA 2971233..2972354 (-) 1122 WP_003232938.1 competence protein CoiA Machinery gene
  LK685_RS15535 (LK685_15540) - 2972428..2972550 (+) 123 WP_003245684.1 hypothetical protein -
  LK685_RS15540 (LK685_15545) mecA 2972545..2973201 (-) 657 WP_003245194.1 adaptor protein MecA Regulator
  LK685_RS15545 (LK685_15550) - 2973168..2973308 (-) 141 WP_119122854.1 hypothetical protein -
  LK685_RS15550 (LK685_15555) - 2973478..2974134 (+) 657 WP_116315461.1 TerC family protein -
  LK685_RS15555 (LK685_15560) spx 2974177..2974572 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  LK685_RS15560 (LK685_15565) - 2974753..2975331 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  LK685_RS15565 (LK685_15570) - 2975496..2976713 (-) 1218 WP_229762780.1 MFS transporter -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43735.78 Da        Isoelectric Point: 10.1187

>NTDB_id=622195 LK685_RS15530 WP_003232938.1 2971233..2972354(-) (coiA) [Bacillus sp. BC1-43]
MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLKTQRASPILEP
YIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAFHWQFINASPY
RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPHRFNSKETNRL
RLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNKNIALRFECSE
ECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=622195 LK685_RS15530 WP_003232938.1 2971233..2972354(-) (coiA) [Bacillus sp. BC1-43]
CTGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACGGTTCTTCTGTCCGGTATGCGGGGGAGAGCT
AGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTGCTCCATAGACATCGAACCGG
AAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAAACACAACGGGCTTCACCAATATTGGAGCCG
TATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGGATCAAGGAGCATATGCTTGCTGTTGAATATCAATGCGC
CACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAGAAGGAATCATCCCGCAGTGGATTATGGGAT
ACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTTCATTGGCAGTTTATCAATGCAAGTCCATAC
AGAGAGCTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAGCCACATCATTCCATTCTACACAAACCATTC
TTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATCTTTTTTTCACTGAACCGAAACCCTCAATTC
AATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCATCGGTTTAACTCAAAGGAAACAAATCGCCTT
AGGCTGCTGTTTTATGAGAAACGGCAGACGCCTTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGAAAAGGGGC
AGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTATGACGGATCTTGGAGGTAAACGTGCGCCAA
TTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAGAACATTGCACTCAGGTTTGAATGCAGCGAA
GAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAATCAGCCTGCAGGCGGCATACACTCCATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

99.196

100

0.992