Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LK685_RS14055 Genome accession   NZ_CP086061
Coordinates   2708728..2709303 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus sp. BC1-43     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2703728..2714303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS14030 (LK685_14035) mobB 2704124..2704645 (-) 522 WP_049139878.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  LK685_RS14035 (LK685_14040) glp 2704606..2705898 (-) 1293 WP_049139877.1 gephyrin-like molybdotransferase Glp -
  LK685_RS14040 (LK685_14045) - 2705916..2706935 (-) 1020 WP_229762404.1 molybdopterin-synthase adenylyltransferase MoeB -
  LK685_RS14045 (LK685_14050) - 2706986..2707585 (-) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  LK685_RS14050 (LK685_14055) cse15 2707722..2708687 (+) 966 WP_003245018.1 spore protein Cse15 -
  LK685_RS14055 (LK685_14060) rok 2708728..2709303 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  LK685_RS14060 (LK685_14065) ykuV 2709769..2710215 (-) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  LK685_RS14065 (LK685_14070) ahpA 2710287..2710829 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  LK685_RS14070 (LK685_14075) mscT 2711066..2711869 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  LK685_RS14075 (LK685_14080) - 2711906..2712151 (-) 246 WP_003232382.1 YkuS family protein -
  LK685_RS14080 (LK685_14085) - 2712213..2713337 (-) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  LK685_RS14085 (LK685_14090) dapD 2713407..2714117 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=622190 LK685_RS14055 WP_003232378.1 2708728..2709303(-) (rok) [Bacillus sp. BC1-43]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=622190 LK685_RS14055 WP_003232378.1 2708728..2709303(-) (rok) [Bacillus sp. BC1-43]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1