Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LK685_RS13935 Genome accession   NZ_CP086061
Coordinates   2684947..2685225 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus sp. BC1-43     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2679947..2690225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS13915 (LK685_13920) ade 2680006..2681739 (-) 1734 WP_003245362.1 adenine deaminase -
  LK685_RS13920 (LK685_13925) ktrC 2681894..2682559 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  LK685_RS13925 (LK685_13930) - 2682622..2683455 (-) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  LK685_RS13930 (LK685_13935) kinC 2683471..2684757 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  LK685_RS13935 (LK685_13940) abrB 2684947..2685225 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  LK685_RS13940 (LK685_13945) mreBH 2685509..2686516 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  LK685_RS13945 (LK685_13950) - 2686617..2686751 (+) 135 WP_003238865.1 protein YkpC -
  LK685_RS13950 (LK685_13955) - 2686861..2688093 (+) 1233 WP_003232341.1 aminopeptidase -
  LK685_RS13955 (LK685_13960) - 2688127..2689038 (-) 912 WP_003245639.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=622189 LK685_RS13935 WP_003244728.1 2684947..2685225(-) (abrB) [Bacillus sp. BC1-43]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=622189 LK685_RS13935 WP_003244728.1 2684947..2685225(-) (abrB) [Bacillus sp. BC1-43]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576