Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LK685_RS09825 Genome accession   NZ_CP086061
Coordinates   1863561..1864181 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. BC1-43     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1858561..1869181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS09805 (LK685_09810) dnaD 1858852..1859550 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  LK685_RS09810 (LK685_09815) nth 1859569..1860228 (+) 660 WP_009967580.1 endonuclease III -
  LK685_RS09815 (LK685_09820) - 1860225..1860719 (+) 495 WP_009967579.1 hypothetical protein -
  LK685_RS09820 (LK685_09825) - 1860795..1863539 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  LK685_RS09825 (LK685_09830) recU 1863561..1864181 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  LK685_RS09830 (LK685_09835) - 1864222..1865184 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  LK685_RS09835 (LK685_09840) sspM 1865209..1865313 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  LK685_RS09840 (LK685_09845) - 1865512..1865757 (+) 246 WP_004398488.1 YppD family protein -
  LK685_RS09845 (LK685_09850) - 1865803..1866174 (+) 372 WP_003246080.1 YppE family protein -
  LK685_RS09850 (LK685_09855) - 1866213..1866401 (-) 189 WP_003230690.1 YppF family protein -
  LK685_RS09855 (LK685_09860) - 1866589..1866966 (+) 378 WP_004398696.1 YppG family protein -
  LK685_RS09860 (LK685_09865) - 1866987..1867406 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  LK685_RS09865 (LK685_09870) - 1867544..1868050 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=622183 LK685_RS09825 WP_004399067.1 1863561..1864181(-) (recU) [Bacillus sp. BC1-43]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=622183 LK685_RS09825 WP_004399067.1 1863561..1864181(-) (recU) [Bacillus sp. BC1-43]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1