Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LK685_RS08820 Genome accession   NZ_CP086061
Coordinates   1682691..1684421 (+) Length   576 a.a.
NCBI ID   WP_015714238.1    Uniprot ID   A0A8E0SBE0
Organism   Bacillus sp. BC1-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1677691..1689421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS08795 (LK685_08800) - 1678055..1678309 (+) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -
  LK685_RS08800 (LK685_08805) - 1678299..1679189 (+) 891 WP_003230262.1 farnesyl diphosphate synthase -
  LK685_RS08805 (LK685_08810) dxs 1679364..1681265 (+) 1902 WP_003245985.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LK685_RS08810 (LK685_08815) - 1681262..1682107 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  LK685_RS08815 (LK685_08820) argR 1682205..1682654 (+) 450 WP_003230265.1 arginine repressor ArgR -
  LK685_RS08820 (LK685_08825) recN 1682691..1684421 (+) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  LK685_RS08825 (LK685_08830) spoIVB 1684595..1685875 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  LK685_RS08830 (LK685_08835) spo0A 1686151..1686954 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  LK685_RS08835 (LK685_08840) - 1687418..1688536 (-) 1119 WP_131227606.1 NADH-dependent flavin oxidoreductase -
  LK685_RS08840 (LK685_08845) - 1688609..1688761 (-) 153 WP_014480226.1 hypothetical protein -
  LK685_RS08845 (LK685_08850) - 1689069..1689365 (+) 297 WP_014480225.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64598.45 Da        Isoelectric Point: 4.7429

>NTDB_id=622181 LK685_RS08820 WP_015714238.1 1682691..1684421(+) (recN) [Bacillus sp. BC1-43]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKMSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAENVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=622181 LK685_RS08820 WP_015714238.1 1682691..1684421(+) (recN) [Bacillus sp. BC1-43]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTTAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAGTCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTTGGAATGGCATCAGCGCAGCTTGAAGATATATCTGATATAAACGAACCGCTGAAAAAAAT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGAAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGATCACAAGTGCTGTGTATTACACACCT
CCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.653

100

0.997