Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LK685_RS08300 Genome accession   NZ_CP086061
Coordinates   1595263..1596030 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus sp. BC1-43     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1590263..1601030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS08270 (LK685_08275) pgpH 1590559..1592694 (+) 2136 WP_110109423.1 cyclic-di-AMP phosphodiesterase PgpH -
  LK685_RS08275 (LK685_08280) ybeY 1592695..1593168 (+) 474 WP_032722131.1 rRNA maturation RNase YbeY -
  LK685_RS08280 (LK685_08285) - 1593149..1593520 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  LK685_RS08285 (LK685_08290) - 1593639..1594049 (+) 411 WP_032722130.1 cytidine deaminase -
  LK685_RS08290 (LK685_08295) era 1594030..1594935 (+) 906 WP_003230051.1 GTPase Era -
  LK685_RS08295 (LK685_08300) - 1595083..1595226 (+) 144 WP_003230053.1 YqzL family protein -
  LK685_RS08300 (LK685_08305) recO 1595263..1596030 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  LK685_RS08305 (LK685_08310) glyQ 1596327..1597214 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  LK685_RS08310 (LK685_08315) glyS 1597207..1599246 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  LK685_RS08315 (LK685_08320) ccpN 1599379..1600017 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  LK685_RS08320 (LK685_08325) - 1600043..1600855 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=622171 LK685_RS08300 WP_003230055.1 1595263..1596030(+) (recO) [Bacillus sp. BC1-43]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=622171 LK685_RS08300 WP_003230055.1 1595263..1596030(+) (recO) [Bacillus sp. BC1-43]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1