Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LK685_RS06890 Genome accession   NZ_CP086061
Coordinates   1359198..1359944 (+) Length   248 a.a.
NCBI ID   WP_010886586.1    Uniprot ID   A0AAE2SM29
Organism   Bacillus sp. BC1-43     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1354198..1364944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS06875 (LK685_06880) - 1354425..1354616 (-) 192 WP_003222590.1 hypothetical protein -
  LK685_RS06880 (LK685_06885) valS 1355064..1357706 (+) 2643 WP_004398606.1 valine--tRNA ligase -
  LK685_RS06885 (LK685_06890) - 1357766..1359058 (+) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LK685_RS06890 (LK685_06895) comC 1359198..1359944 (+) 747 WP_010886586.1 A24 family peptidase Machinery gene
  LK685_RS06895 (LK685_06900) spoIIB 1360078..1361076 (+) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  LK685_RS06900 (LK685_06905) - 1361229..1361798 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  LK685_RS06905 (LK685_06910) radC 1361835..1362530 (+) 696 WP_003246034.1 DNA repair protein RadC -
  LK685_RS06910 (LK685_06915) mreB 1362622..1363635 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  LK685_RS06915 (LK685_06920) mreC 1363666..1364538 (+) 873 WP_009967915.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26435.04 Da        Isoelectric Point: 9.7944

>NTDB_id=622163 LK685_RS06890 WP_010886586.1 1359198..1359944(+) (comC) [Bacillus sp. BC1-43]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=622163 LK685_RS06890 WP_010886586.1 1359198..1359944(+) (comC) [Bacillus sp. BC1-43]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

100

100

1