Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   N135_RS03640 Genome accession   NC_022362
Coordinates   676920..677357 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni 00-2425     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671920..682357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N135_RS03620 (N135_00726) kdpD 672412..674232 (+) 1821 WP_002858538.1 sensor histidine kinase KdpD -
  N135_RS03625 (N135_00727) uvrB 674334..676307 (-) 1974 WP_002858504.1 excinuclease ABC subunit UvrB -
  N135_RS03630 (N135_00728) - 676461..676691 (+) 231 WP_002852327.1 hypothetical protein -
  N135_RS03635 (N135_00729) - 676681..676923 (+) 243 WP_002854947.1 hypothetical protein -
  N135_RS03640 (N135_00730) Cj0683 676920..677357 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  N135_RS03645 (N135_00731) priA 677339..679192 (+) 1854 WP_002858495.1 primosomal protein N' -
  N135_RS03650 (N135_00732) cipA 679202..680596 (-) 1395 WP_002916267.1 DUF2972 domain-containing protein -
  N135_RS03655 (N135_00733) ispG 680742..681815 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=62216 N135_RS03640 WP_002852324.1 676920..677357(+) (Cj0683) [Campylobacter jejuni subsp. jejuni 00-2425]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=62216 N135_RS03640 WP_002852324.1 676920..677357(+) (Cj0683) [Campylobacter jejuni subsp. jejuni 00-2425]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment