Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   NX050_RS19635 Genome accession   NZ_CP103456
Coordinates   3646680..3647114 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain PN176 (HK176)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3641680..3652114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX050_RS19620 (NX050_19620) poxB 3642079..3643803 (-) 1725 WP_014478872.1 pyruvate oxidase -
  NX050_RS19625 (NX050_19625) mutT 3643870..3644319 (-) 450 WP_014478871.1 8-oxo-dGTP diphosphatase MutT -
  NX050_RS19630 (NX050_19630) topB 3644432..3646615 (-) 2184 WP_014478870.1 DNA topoisomerase III -
  NX050_RS19635 (NX050_19635) lrpC 3646680..3647114 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  NX050_RS19640 (NX050_19640) ydzA 3647299..3647589 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  NX050_RS19645 (NX050_19645) amj 3647634..3648443 (-) 810 WP_014478868.1 lipid II flippase Amj -
  NX050_RS19650 (NX050_19650) ydaG 3648949..3649371 (-) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  NX050_RS19655 (NX050_19655) ydaF 3649449..3650000 (-) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  NX050_RS19660 (NX050_19660) lyxE 3650088..3650591 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  NX050_RS19665 (NX050_19665) ydaD 3650607..3651467 (-) 861 WP_014478865.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=622159 NX050_RS19635 WP_003246585.1 3646680..3647114(-) (lrpC) [Bacillus subtilis strain PN176 (HK176)]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=622159 NX050_RS19635 WP_003246585.1 3646680..3647114(-) (lrpC) [Bacillus subtilis strain PN176 (HK176)]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1