Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NX050_RS17765 Genome accession   NZ_CP103456
Coordinates   3290695..3291411 (-) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain PN176 (HK176)     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3285695..3296411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX050_RS17760 (NX050_17760) hypO 3289890..3290555 (-) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -
  NX050_RS17765 (NX050_17765) treR 3290695..3291411 (-) 717 WP_003233679.1 trehalose operon repressor Regulator
  NX050_RS17770 (NX050_17770) treC 3291432..3293117 (-) 1686 WP_014479164.1 alpha,alpha-phosphotrehalase -
  NX050_RS17775 (NX050_17775) treP 3293188..3294600 (-) 1413 WP_014479163.1 PTS system trehalose-specific EIIBC component -
  NX050_RS17780 (NX050_17780) - 3294789..3294974 (+) 186 Protein_3499 spore germination protein -
  NX050_RS17790 (NX050_17790) - 3295230..3295502 (+) 273 Protein_3500 spore gernimation protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=622155 NX050_RS17765 WP_003233679.1 3290695..3291411(-) (treR) [Bacillus subtilis strain PN176 (HK176)]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=622155 NX050_RS17765 WP_003233679.1 3290695..3291411(-) (treR) [Bacillus subtilis strain PN176 (HK176)]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416