Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NX050_RS15050 Genome accession   NZ_CP103456
Coordinates   2792977..2794113 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN176 (HK176)     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2787977..2799113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX050_RS15010 (NX050_15010) xre 2788321..2788662 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  NX050_RS15015 (NX050_15015) xkdA 2788825..2789421 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  NX050_RS15020 (NX050_15020) xpdC 2789465..2790301 (-) 837 WP_003245071.1 manganese catalase family protein -
  NX050_RS15025 (NX050_15025) pghB 2790378..2790980 (-) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  NX050_RS15030 (NX050_15030) yjqA 2791085..2791462 (+) 378 WP_014479546.1 PH domain-containing protein -
  NX050_RS15035 (NX050_15035) xlyB 2791502..2792455 (-) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  NX050_RS15040 (NX050_15040) yjpA 2792576..2792822 (+) 247 Protein_2971 YciI family protein -
  NX050_RS15045 (NX050_15045) phrA 2792853..2792987 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  NX050_RS15050 (NX050_15050) rapC 2792977..2794113 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  NX050_RS15055 (NX050_15055) - 2794258..2794431 (-) 174 Protein_2974 ATPase -
  NX050_RS15060 (NX050_15060) - 2794526..2795676 (+) 1151 WP_087614160.1 IS3 family transposase -
  NX050_RS15065 (NX050_15065) yjoB 2795718..2796818 (-) 1101 Protein_2976 ATPase YjoB -
  NX050_RS15070 (NX050_15070) bstD 2796967..2797431 (+) 465 WP_014479541.1 DinB family protein -
  NX050_RS15075 (NX050_15075) yjnA 2797650..2798414 (+) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=622130 NX050_RS15050 WP_015252291.1 2792977..2794113(-) (rapC) [Bacillus subtilis strain PN176 (HK176)]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=622130 NX050_RS15050 WP_015252291.1 2792977..2794113(-) (rapC) [Bacillus subtilis strain PN176 (HK176)]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418