Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LKW30_RS05090 Genome accession   NZ_CP086060
Coordinates   1123377..1124756 (+) Length   459 a.a.
NCBI ID   WP_011793447.1    Uniprot ID   A1TIT1
Organism   Paracidovorax citrulli strain HPP21-9-4B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1118377..1129756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKW30_RS05065 - 1118851..1119855 (-) 1005 WP_017439930.1 tripartite tricarboxylate transporter substrate binding protein -
  LKW30_RS05070 - 1119975..1120754 (+) 780 WP_011793443.1 IclR family transcriptional regulator C-terminal domain-containing protein -
  LKW30_RS05075 - 1120975..1121592 (-) 618 WP_011793444.1 glutathione S-transferase family protein -
  LKW30_RS05080 - 1121589..1122584 (-) 996 WP_017439593.1 2-dehydropantoate 2-reductase -
  LKW30_RS05085 - 1122714..1123088 (-) 375 WP_046059903.1 hypothetical protein -
  LKW30_RS05090 radA 1123377..1124756 (+) 1380 WP_011793447.1 DNA repair protein RadA Machinery gene
  LKW30_RS05095 - 1124989..1125462 (+) 474 WP_011793448.1 hypothetical protein -
  LKW30_RS05100 - 1125507..1126445 (+) 939 WP_011793449.1 branched-chain amino acid transaminase -
  LKW30_RS05105 - 1126486..1126692 (+) 207 WP_011793450.1 zinc-finger domain-containing protein -
  LKW30_RS05110 - 1126744..1127691 (-) 948 WP_011793451.1 capsular polysaccharide synthesis protein -
  LKW30_RS05115 - 1127865..1129157 (+) 1293 WP_011793452.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48130.54 Da        Isoelectric Point: 6.8197

>NTDB_id=622123 LKW30_RS05090 WP_011793447.1 1123377..1124756(+) (radA) [Paracidovorax citrulli strain HPP21-9-4B]
MAKDKTVFTCTECGGTSPRWLGKCPACGAWNTLVESVAEAGPGKNRYSTPQHAGLAQSQAVTPLSAIEAADVARTASGIE
ELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQALDALQRLGLPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQLEK
ILATVEATQPAVAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKATGVSIILVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDEG
GPSPRRLSVGLERDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKPLPKGFIAFGEVGL
AGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPRKPIEGLTIHAVERVEEAMEVVRGMG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=622123 LKW30_RS05090 WP_011793447.1 1123377..1124756(+) (radA) [Paracidovorax citrulli strain HPP21-9-4B]
ATGGCCAAAGACAAGACCGTTTTCACCTGTACCGAATGCGGCGGCACCAGCCCGCGCTGGCTTGGCAAGTGCCCTGCCTG
CGGGGCCTGGAACACGCTGGTGGAATCGGTGGCGGAAGCCGGGCCGGGCAAGAATCGCTACAGCACGCCGCAGCATGCGG
GCCTGGCGCAGTCGCAGGCCGTGACGCCGCTGTCGGCCATCGAGGCCGCCGACGTGGCGCGCACCGCCAGCGGCATCGAG
GAACTCGACCGGGTGCTGGGCGGCGGGGTGGTCGAGGGCGGCGTGGTCCTCATCGGTGGCGATCCGGGCATCGGCAAGTC
CACCCTGCTGCTGCAGGCGCTGGATGCGCTGCAGCGCCTGGGCCTGCCCACGCTCTACGTGACGGGCGAGGAGAGCGGGG
CGCAGGTGGCGCTGCGCTCGCGCCGGCTGGGGCTGGACCACAGCCAGGTCAACGTCCTGGCGGAAATCCAGCTCGAGAAG
ATCCTCGCCACCGTCGAGGCGACGCAGCCCGCCGTGGCCGTGATCGATTCCATCCAGACCGTGTATTCGGACCAGCTCAC
CAGCGCGCCGGGTTCGGTGGCCCAGGTGCGCGAATGCGCGGCGCACCTCACGCGGGCGGCCAAGGCCACCGGCGTGTCCA
TCATCCTCGTGGGCCACGTGACCAAGGAAGGGGCGCTGGCCGGCCCGCGCGTGCTGGAACACATGGTGGACACGGTGCTG
TACTTCGAGGGCGATACGCACAGCCAGTTCCGGCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCCGTGAACGAGATCGG
CGTGTTCGCCATGACCGAGAAGGGCCTCAAGGGCGTGACCAATCCCAGCGCCATCTTCCTGAGCCAGCACAGCGAGCCGG
TGCCCGGCAGCTGCGTGCTGGTCACGCTGGAAGGCACGCGCCCCATGCTGGTGGAGATCCAGGCCCTGGTGGACGAGGGC
GGGCCCAGCCCCCGGCGCCTGTCCGTGGGCCTGGAGCGCGACCGCCTCGCCATGCTGCTGGCCGTGCTGCACCGCCACGC
GGGCGTCGCCTGCATGGACCAGGACGTGTTCGTGAACGCCGTGGGCGGCGTGCGCATCAGCGAACCCGCGGCCGACCTGG
CGGTGATGCTGGCCATCACCAGCAGCCTGCGCGGCAAGCCCCTGCCCAAGGGCTTCATCGCTTTCGGCGAAGTCGGGCTG
GCGGGCGAGGTGCGCCCTGCGCCGCGCGGCCAGGAGCGCCTGAAGGAGGCCGCCAAGCTCGGTTTCACGATGGCCGTGGT
GCCCAAGGCCAACGCGCCCAGGAAGCCCATCGAGGGCCTGACGATCCATGCGGTGGAACGGGTGGAAGAGGCCATGGAAG
TGGTCCGCGGCATGGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1TIT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.913

100

0.49
  radA Streptococcus mitis NCTC 12261

46.711

99.346

0.464
  radA Streptococcus pneumoniae Rx1

48.499

94.336

0.458
  radA Streptococcus pneumoniae R6

48.499

94.336

0.458
  radA Streptococcus pneumoniae TIGR4

48.499

94.336

0.458
  radA Streptococcus pneumoniae D39

48.499

94.336

0.458
  radA Streptococcus mitis SK321

48.499

94.336

0.458