Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LGV80_RS12130 Genome accession   NZ_CP086018
Coordinates   2578638..2581181 (-) Length   847 a.a.
NCBI ID   WP_247394034.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RS642     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2573638..2586181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV80_RS12110 (LGV80_12080) - 2574144..2575058 (-) 915 WP_028852903.1 peptidase -
  LGV80_RS12115 (LGV80_12085) - 2575142..2575978 (-) 837 WP_016725806.1 transglutaminase family protein -
  LGV80_RS12120 (LGV80_12090) - 2576036..2576986 (-) 951 WP_011001072.1 alpha-E domain-containing protein -
  LGV80_RS12125 (LGV80_12095) - 2577049..2578530 (-) 1482 WP_016721677.1 circularly permuted type 2 ATP-grasp protein -
  LGV80_RS12130 (LGV80_12100) comA 2578638..2581181 (-) 2544 WP_247394034.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LGV80_RS12135 (LGV80_12105) - 2581191..2582006 (-) 816 WP_071015028.1 TatD family hydrolase -
  LGV80_RS12140 (LGV80_12110) lolD 2582035..2582769 (-) 735 WP_011001068.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LGV80_RS12145 (LGV80_12115) - 2582762..2584012 (-) 1251 WP_011001067.1 lipoprotein-releasing ABC transporter permease subunit -
  LGV80_RS26360 - 2584085..2585165 (+) 1081 Protein_2373 hypothetical protein -

Sequence

Protein


Download         Length: 847 a.a.        Molecular weight: 90903.79 Da        Isoelectric Point: 10.5253

>NTDB_id=622091 LGV80_RS12130 WP_247394034.1 2578638..2581181(-) (comA) [Ralstonia pseudosolanacearum strain RS642]
MRALLIGFVAGCMALQTRPALAPVWQPALLGLACLLAMALLRRGARLPRLVPVMAALVAACAGFGWSDWRAQQRLSVVLA
PAWEGKDIRATGVVAELPEVTEDATRFLFRIESSDAGDAVPPRVRLSWYGLRSWHERQREAEAATDRRAGIPDLQPGQRW
QLTLRLKRPHSLMNPGGFDGEYAMLADDVRAAGYVYTGKRARNALMGEADAGSGVGLRVERWRAAVRRHLLAALPEARYA
PVIVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFGALWMALWRRSFGLARWLRTPLPLRMPAQRAGAVA
AMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLADRSVPVSLSLCWAAALVALVDPWAVMSAGGWLSFGAVAVIFLVARI
VAADARDDVRRPAWPVRAWRGLRGAARVQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALMGTALPEPW
SQPLLIWAEASFAWLMPWLDALALPGGSVWVAPAAPAWAWGLAVVGVPLLLVPGGYRAWAWRAQGAVLLLPMLLARAPAP
PPGEFRMVAFDIGQGAATLVETAGHRLLFDTGPRQGDLADAADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAG
VPVRTMLASLPPGHRLERQARALGIEPAGCVAGQRWAWDGVAFEILYPVQVPSDRAAVSSNARSCVLRIANARYAAMLAG
DIGRAQEAALIAAEAPERLMADILLVPHHGSRTSSSGAFLDAVSPQVAVFQVGYRNRYGHPHPQVWQRYGARGIERLRTD
ATGAVVIETRGDALAVRTARSMRPRYWSSALEVAALAETTEPTGAQP

Nucleotide


Download         Length: 2544 bp        

>NTDB_id=622091 LGV80_RS12130 WP_247394034.1 2578638..2581181(-) (comA) [Ralstonia pseudosolanacearum strain RS642]
ATGCGCGCCCTGCTGATCGGCTTCGTCGCGGGGTGCATGGCGCTGCAGACGCGGCCGGCGCTGGCGCCGGTGTGGCAGCC
GGCGCTGCTTGGGCTCGCTTGCCTGCTGGCGATGGCGTTGCTGCGGCGCGGCGCTCGGTTGCCCAGGCTCGTTCCCGTGA
TGGCCGCGCTGGTGGCGGCCTGCGCCGGCTTCGGCTGGAGCGATTGGCGCGCGCAGCAGCGCTTGTCCGTGGTGCTGGCG
CCCGCATGGGAGGGCAAGGACATCCGCGCGACGGGCGTCGTGGCCGAGCTGCCCGAGGTCACCGAGGACGCCACGCGCTT
CCTGTTCCGGATTGAATCCAGCGACGCGGGCGATGCCGTACCGCCGCGCGTGCGGCTGTCGTGGTACGGCCTGCGCAGCT
GGCATGAGCGGCAGCGGGAGGCGGAGGCCGCCACCGATCGCCGCGCCGGCATTCCCGATCTGCAGCCCGGCCAGCGCTGG
CAGCTGACGCTGCGGCTCAAGCGGCCGCACAGCCTGATGAATCCCGGCGGCTTCGATGGCGAATACGCGATGCTTGCCGA
CGATGTCCGTGCCGCGGGCTACGTGTACACGGGCAAACGCGCGCGCAATGCGTTGATGGGCGAAGCCGATGCCGGTTCCG
GTGTTGGGCTCCGTGTCGAGCGCTGGCGCGCCGCGGTGCGGCGGCACCTCCTGGCTGCGCTGCCCGAGGCACGCTACGCG
CCGGTGATCGTCGCGCTGGTGGTGGGCGACCAGAGCGGCATCGCGCAGGCGGATTGGGAGCGCTTCCGCCGCACCGGCAT
CAGCCATCTCGTCAGCATTTCCGGTCTGCACATCACGATGATCGCCGGGCTGTTCGGCGCACTGTGGATGGCGCTGTGGC
GGCGCTCGTTCGGCCTGGCCCGCTGGCTGCGCACACCGCTGCCGCTGCGCATGCCGGCCCAGCGTGCGGGCGCCGTCGCC
GCCATGGCGGCGGCGTTTGCCTATTGCCTGCTGGCGGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCGCGAC
CGTTGCCGTGGCGCGGCTGGCCGATCGCAGCGTGCCGGTCAGCCTGTCGCTGTGCTGGGCGGCGGCCTTGGTGGCGCTGG
TGGATCCGTGGGCGGTCATGTCGGCGGGAGGCTGGCTGTCGTTCGGCGCCGTGGCGGTCATCTTCCTGGTCGCGCGGATC
GTTGCCGCCGATGCGCGGGACGACGTCCGCCGGCCCGCCTGGCCGGTGCGCGCCTGGCGCGGCCTGCGCGGCGCCGCGCG
CGTCCAGCTGGCCGTGACGTTCGGCCTGCTGCCGTTGACCTTGCTGCTGTTCCAGCAGGTCTCGGTGGTGTCGGCCGTGG
CCAACGCGCTGGCGATCCCGGTGGTCAGCTTTGTCACGACGCCGCTGGCGCTGATGGGCACGGCGTTGCCCGAGCCATGG
TCGCAGCCGCTGCTGATATGGGCCGAGGCCAGCTTCGCCTGGCTCATGCCGTGGCTGGATGCGCTGGCGCTGCCCGGCGG
GTCGGTGTGGGTGGCGCCCGCCGCGCCGGCCTGGGCCTGGGGGCTGGCGGTGGTCGGTGTGCCGTTGCTGCTCGTGCCGG
GCGGGTATCGCGCCTGGGCCTGGCGGGCGCAGGGCGCGGTGCTGCTGCTGCCGATGCTGCTGGCACGCGCACCGGCGCCG
CCGCCGGGCGAGTTCCGCATGGTCGCATTCGACATCGGCCAGGGCGCCGCCACGCTGGTCGAGACGGCCGGCCACCGGCT
GCTGTTCGATACCGGTCCCCGCCAAGGCGACCTGGCCGATGCCGCCGATCGCGTGATCGTCCCGTATCTGCGCGGACATG
GGGTGCAGGCCATCGACACGCTGGTGGTCAGCCATGAGGACAGCGATCACGCCGGCGGCACCGAAACGGTGATGGCCGGT
GTGCCGGTGCGCACCATGCTGGCGTCCCTGCCGCCCGGCCACCGGCTGGAGCGGCAGGCCCGCGCGCTCGGCATCGAGCC
CGCCGGCTGCGTGGCCGGGCAGCGCTGGGCATGGGACGGCGTCGCCTTCGAAATCCTGTATCCGGTGCAGGTGCCCTCCG
ATCGGGCGGCCGTGTCCAGCAATGCCCGCAGCTGTGTGCTGCGCATCGCCAACGCGCGCTACGCCGCCATGCTGGCCGGC
GACATCGGCCGCGCCCAGGAAGCGGCGCTGATTGCCGCCGAAGCGCCGGAGCGGCTCATGGCAGATATCTTGCTTGTGCC
CCATCATGGCAGCAGGACGAGCTCCAGCGGCGCGTTCCTGGACGCGGTCTCGCCGCAGGTGGCGGTGTTCCAGGTCGGCT
ACCGCAACCGGTACGGTCATCCGCATCCGCAGGTCTGGCAGCGCTACGGCGCGCGCGGCATCGAGCGGCTGCGCACCGAT
GCCACCGGGGCCGTCGTCATCGAGACGCGCGGCGATGCGCTGGCGGTGCGGACGGCGCGGTCGATGCGGCCGCGCTACTG
GTCCTCGGCGCTGGAGGTGGCCGCCCTGGCAGAGACCACGGAGCCCACGGGCGCGCAGCCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(246-532)

Domain of unknown function (DUF4131) (DUF4131)

(24-198)

Beta-lactamase superfamily domain (Lactamase_B_2)

(585-745)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

99.292

100

0.993