Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SCD_RS13050 Genome accession   NC_022357
Coordinates   2685680..2686639 (+) Length   319 a.a.
NCBI ID   WP_009207603.1    Uniprot ID   S6ADG0
Organism   Sulfuricella denitrificans skB26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2680680..2691639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCD_RS13025 (SCD_02918) - 2681619..2681870 (-) 252 WP_009207608.1 YfhL family 4Fe-4S dicluster ferredoxin -
  SCD_RS13030 (SCD_02917) coaD 2681891..2682373 (-) 483 WP_009207607.1 pantetheine-phosphate adenylyltransferase -
  SCD_RS13035 (SCD_02916) rsmD 2682363..2682926 (-) 564 WP_009207606.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SCD_RS13040 (SCD_02915) - 2682930..2684246 (-) 1317 WP_009207605.1 pitrilysin family protein -
  SCD_RS13045 (SCD_02914) - 2684236..2685612 (-) 1377 WP_009207604.1 pitrilysin family protein -
  SCD_RS13050 (SCD_02913) pilA 2685680..2686639 (+) 960 WP_009207603.1 signal recognition particle-docking protein FtsY Machinery gene
  SCD_RS13055 (SCD_02912) ftsE 2686636..2687286 (+) 651 WP_009207602.1 cell division ATP-binding protein FtsE -
  SCD_RS13060 (SCD_02911) ftsX 2687283..2688191 (+) 909 WP_009207601.1 permease-like cell division protein FtsX -
  SCD_RS13065 (SCD_02910) rpoH 2688435..2689298 (+) 864 WP_009207600.1 RNA polymerase sigma factor RpoH -
  SCD_RS13070 (SCD_02909) ccoS 2689532..2689738 (-) 207 WP_009207599.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 34476.58 Da        Isoelectric Point: 6.7485

>NTDB_id=62199 SCD_RS13050 WP_009207603.1 2685680..2686639(+) (pilA) [Sulfuricella denitrificans skB26]
MLSFFKSDKKADESLEQPQGWAARLKQGLAKTRDILNTPVSGLFAGGKIDEAFYEELETVLLSADVGVSATQYLLDDLRS
RVKRDKLDDAAQLKQALRDGLQTLLTPLESPLSLSGHKPYVIMMTGVNGAGKTTTIGKLAKYFQAQGKSVLLAAGDTFRA
AAREQLQVWGERNNVTVITQEGQDSAAVIFDAIQAARARGIDIVLADTAGRLPTQLHLMEELRKIKRVIAKAEPGAPHET
ILVLDANTGQNAIAQVKSFDDALQVSGLVLTKLDGTARGGVIAAIAKTRPIPVRFIGVGEQLDDLRPFVAKEFVEALFE

Nucleotide


Download         Length: 960 bp        

>NTDB_id=62199 SCD_RS13050 WP_009207603.1 2685680..2686639(+) (pilA) [Sulfuricella denitrificans skB26]
ATGCTAAGTTTCTTCAAATCCGACAAGAAAGCCGATGAAAGCCTGGAACAGCCCCAAGGCTGGGCGGCCAGACTGAAACA
AGGGTTAGCCAAAACCCGGGACATCCTGAATACGCCGGTTTCCGGTCTGTTCGCCGGCGGCAAGATCGACGAGGCGTTTT
ACGAGGAGCTAGAAACCGTCCTGCTTTCCGCCGATGTCGGTGTCTCCGCCACCCAATACCTGCTCGATGACCTGAGAAGC
CGCGTCAAGCGCGACAAGCTGGATGATGCGGCGCAACTCAAGCAGGCTTTGCGCGATGGCCTACAGACCTTGCTCACCCC
GTTGGAGTCGCCGCTATCCCTGTCCGGCCACAAACCCTACGTCATCATGATGACAGGCGTTAACGGCGCCGGCAAAACCA
CCACCATCGGCAAGCTGGCCAAATATTTTCAGGCCCAGGGAAAATCGGTGTTGCTCGCCGCCGGCGACACCTTCCGCGCT
GCAGCGCGCGAACAACTGCAGGTATGGGGAGAACGCAACAATGTCACGGTCATCACCCAGGAAGGCCAGGACTCCGCTGC
CGTGATCTTCGACGCGATCCAGGCAGCGCGCGCGCGCGGCATCGACATCGTGCTGGCAGACACCGCCGGACGACTGCCCA
CCCAGTTGCACCTGATGGAAGAACTAAGAAAGATCAAGCGCGTCATCGCCAAGGCCGAACCGGGCGCACCCCACGAAACC
ATCCTGGTGCTCGACGCCAACACCGGCCAGAACGCCATCGCCCAGGTCAAATCCTTCGACGATGCACTACAGGTGTCCGG
GCTGGTCCTGACCAAGCTCGACGGCACAGCCAGGGGCGGCGTCATCGCCGCTATCGCCAAGACCCGCCCGATCCCGGTGA
GGTTCATCGGCGTCGGCGAGCAACTTGATGATCTGCGACCCTTTGTCGCCAAGGAATTTGTTGAGGCACTGTTTGAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(38-100)

SRP54-type protein, GTPase domain (SRP54)

(120-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6ADG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

67.869

95.611

0.649

Multiple sequence alignment