Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LJC78_RS14330 Genome accession   NZ_CP086007
Coordinates   2639718..2640464 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2634718..2645464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS14305 (LJC78_14305) mreC 2635124..2635996 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  LJC78_RS14310 (LJC78_14310) mreB 2636027..2637040 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  LJC78_RS14315 (LJC78_14315) radC 2637132..2637827 (-) 696 WP_014480455.1 RadC family protein -
  LJC78_RS14320 (LJC78_14320) maf 2637864..2638433 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  LJC78_RS14325 (LJC78_14325) spoIIB 2638586..2639584 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  LJC78_RS14330 (LJC78_14330) comC 2639718..2640464 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  LJC78_RS14335 (LJC78_14335) folC 2640604..2641896 (-) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  LJC78_RS14340 (LJC78_14340) valS 2641956..2644598 (-) 2643 WP_014480461.1 valine--tRNA ligase -
  LJC78_RS14345 (LJC78_14345) - 2645046..2645237 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=621988 LJC78_RS14330 WP_072592551.1 2639718..2640464(-) (comC) [Bacillus subtilis subsp. natto strain SCP010-1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=621988 LJC78_RS14330 WP_072592551.1 2639718..2640464(-) (comC) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996