Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LJC78_RS12550 Genome accession   NZ_CP086007
Coordinates   2335160..2335963 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2330160..2340963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS12525 (LJC78_12530) glpQB 2331298..2332029 (-) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -
  LJC78_RS12530 (LJC78_12535) yqiI 2332108..2332728 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  LJC78_RS12535 (LJC78_12540) - 2332748..2333044 (-) 297 WP_014480225.1 hypothetical protein -
  LJC78_RS12540 (LJC78_12545) - 2333352..2333504 (+) 153 WP_014480226.1 hypothetical protein -
  LJC78_RS12545 (LJC78_12550) yqiG 2333577..2334695 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  LJC78_RS12550 (LJC78_12555) spo0A 2335160..2335963 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  LJC78_RS12555 (LJC78_12560) spoIVB 2336239..2337519 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  LJC78_RS12560 (LJC78_12565) recN 2337694..2339424 (-) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  LJC78_RS12565 (LJC78_12570) argR 2339461..2339910 (-) 450 WP_003230265.1 arginine repressor ArgR -
  LJC78_RS12570 (LJC78_12575) yqxC 2340008..2340853 (-) 846 WP_031600677.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=621969 LJC78_RS12550 WP_003226427.1 2335160..2335963(-) (spo0A) [Bacillus subtilis subsp. natto strain SCP010-1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=621969 LJC78_RS12550 WP_003226427.1 2335160..2335963(-) (spo0A) [Bacillus subtilis subsp. natto strain SCP010-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1